View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_4 (Length: 693)
Name: NF1936_low_4
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 166 - 680
Target Start/End: Complemental strand, 32266030 - 32265516
Alignment:
| Q |
166 |
tgaaaaattaaattcaatcatgaaaatatatatcgtttcttcttgaatcttctgcaaacaatcttattttcacataaatatatcataatttctagttcca |
265 |
Q |
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| T |
32266030 |
tgaaaaattaaattcaatcatgaaaatatatatcgtttcttcttgaatcttctgcaaacaatcttattttcacataaatatatcataatttctagttcca |
32265931 |
T |
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| Q |
266 |
tctatattccatatgcatgggatggttctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgttaa |
365 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32265930 |
tctatattccatatgcatggggtggttctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgctaa |
32265831 |
T |
|
| Q |
366 |
tagaaggggggatgacatatttttcctatgttaaaatggagccaggggaaatttttacatggcccaatcaaacttcctatacagtaatcttgttccaaca |
465 |
Q |
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| T |
32265830 |
tagaaggggggatgacatatttttcctatgttaaaatggagccaggggaaatttttacatggcccaatcaaacttcctatacagtaatcttgttccaaca |
32265731 |
T |
|
| Q |
466 |
caatcaccttcacaagatatgcttcatactggacgtccaaccgaacgacttctttcttctgcgtcgtggtgcaaagttgaggccaaacatctccttgaaa |
565 |
Q |
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| T |
32265730 |
caatcaccttcacaagatatgcttcatactggacgtccaaccgaacgacttctttcttctgcgtcgtggtgcaaagttgaggccaaacatctccttgaaa |
32265631 |
T |
|
| Q |
566 |
gcctgatcaggctcaactgtaccaaccagctttgcaacaatggttgcactctctctaacatggtttatatctgtttcagaccataggcaatgagccaatt |
665 |
Q |
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| T |
32265630 |
gcctgatcaggctcaactgtaccaaccagctttgcaacaatggttgcactctctctaacatggtttatatctgtttcagaccataggcgatgagccaatt |
32265531 |
T |
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| Q |
666 |
gcaacctcctatgct |
680 |
Q |
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| T |
32265530 |
gcaacctcctatgct |
32265516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 32268172 - 32268004
Alignment:
| Q |
1 |
cacttcaactaaatctcgtattttgaaagaagagaataataaccttttaatgctggttgttttacaaatagagatggacgaaaaagttgctactttgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32268172 |
cacttcaactaaatctcgtattttgaaagaagagaataataaccttttaatgctggttgttttacaaatagagatggacgaaaaagttgcaactttgttg |
32268073 |
T |
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| Q |
101 |
aatttataaaattatatgttttcannnnnnnncttggttcttgaattgtgatacgaaaaattacttgaa |
169 |
Q |
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| T |
32268072 |
aatttataaaattatatgttttcattttttttcttggttcttgaattgtgatacgaaaaattacttgaa |
32268004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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