View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1936_low_6 (Length: 639)
Name: NF1936_low_6
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 32502175 - 32502803
Alignment:
| Q |
1 |
ctgggcatggtaatgttgcatctaaactaattgagtactgttgtcctagttaacacagttgcaaaatgaattataacctagttgaaaatgaattttaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32502175 |
ctgggcatggtaatgttgcatctaaactaattgagtactgttgtcctagttaacacagttgcaaaatgaattataacctagttgaaaatgaattttaatc |
32502274 |
T |
|
| Q |
101 |
tggctgcagtttactgtaacaaagacaaactaaatttgttttggattaatgataatgttacaatctcgaatttgaagagccaattgaatggtattctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
32502275 |
cggctgcagtttactgtaacaaagacaaactaaatttgttttggattaatgataatgttacaatctcgaatttgaagagataattaaatggtattctcaa |
32502374 |
T |
|
| Q |
201 |
tcaaagtcacccaagaatggtggtcattgttaagtatcgtggtgcatcggtcgactcaaatggacatgtttaactcaccaaaatgaaatttcaaaatgac |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32502375 |
tcaaagtgacccaagaatggtggtcattgttaagtatcgtggtgcatcggtcgactcaaatggacacgtttaactcaccaaaatgaaatttcaaaatgac |
32502474 |
T |
|
| Q |
301 |
agcgatgtaagaaccatgttgtctatattcacttagtataatttcatgggaccgtcaagttagacactatcttggtcaaatttgttcatgttattgagac |
400 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32502475 |
aacgatgtaagaaccatgttgtctatattcacttagtataatttcatgggaccgtcgagttagacactatcttggtcaaatttgttcatgttattgagac |
32502574 |
T |
|
| Q |
401 |
aaacttcattttcccaggacattcaaagaaattgcaatttacaattttgaatccggctaagaaagcacgccatcttgtgatagtgctactagcttggcta |
500 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32502575 |
aagcttcattttcccaggacattcaaagaaattgcaatttacaattttgaatccggctaagaaagcacgccatcttgtgatagtgctactagcttggcta |
32502674 |
T |
|
| Q |
501 |
atccatgatattgtttgtgtttgtaatttatttctttaagagtatcctttctatttcatgttatctgatatgaattatgttgttttatttgagttaatga |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32502675 |
atccatgatattgtttgtgtttgtaatttatttctttaagagtatcctttctatttcatgttatctgatatgaattatgttgttttatttgagttaatga |
32502774 |
T |
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| Q |
601 |
atgctagttttttcaatttcttgtctgtg |
629 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
32502775 |
atgctagttttttcaatttcttgtctgtg |
32502803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 547 - 623
Target Start/End: Complemental strand, 18375475 - 18375399
Alignment:
| Q |
547 |
ctttctatttcatgttatctgatatgaattatgttgttttatttgagttaatgaatgctagttttttcaatttcttg |
623 |
Q |
| |
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||||| |||| ||||||||| |||||||||||||||| || |||| |||||||||| |||| |||||||||||||| |
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| T |
18375475 |
ctttcaatttgatgttatctattatgaattatgttgttgtacttgaattaatgaatggtagtattttcaatttcttg |
18375399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 11648397 - 11648282
Alignment:
| Q |
85 |
aaaatgaattttaatctggctgcagtttactgtaacaaagacaaactaaatttgtt---ttggattaatgataatgttacaatctcgaatttgaagagcc |
181 |
Q |
| |
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|||||||||||||| || ||| |||||||| ||||| | ||||||||||||||| | | || ||||||||||||||| | | |||||||||||| |
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| T |
11648397 |
aaaatgaattttaacctagctcgagtttactataacagtggcaaactaaatttgttaattagaatcaatgataatgttacactttatgatttgaagagcc |
11648298 |
T |
|
| Q |
182 |
aattgaatggtattct |
197 |
Q |
| |
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|| |||||||| |||| |
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| T |
11648297 |
aactgaatggtcttct |
11648282 |
T |
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