View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1936_low_7 (Length: 625)

Name: NF1936_low_7
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1936_low_7
NF1936_low_7
[»] chr1 (13 HSPs)
chr1 (413-608)||(23651591-23651774)
chr1 (413-608)||(23620246-23620429)
chr1 (413-608)||(23737025-23737208)
chr1 (413-608)||(23706528-23706712)
chr1 (24-151)||(23620958-23621085)
chr1 (24-151)||(23652303-23652430)
chr1 (24-151)||(23737737-23737864)
chr1 (73-202)||(23705760-23705888)
chr1 (287-344)||(23705983-23706040)
chr1 (295-344)||(23620902-23620951)
chr1 (295-344)||(23652247-23652296)
chr1 (347-380)||(23706056-23706089)
chr1 (295-344)||(23737681-23737730)
[»] chr3 (5 HSPs)
chr3 (84-166)||(52809476-52809557)
chr3 (441-498)||(1922919-1922976)
chr3 (511-593)||(54138867-54138947)
chr3 (521-593)||(53285099-53285169)
chr3 (545-593)||(52809133-52809181)
[»] chr4 (1 HSPs)
chr4 (450-593)||(48432323-48432463)
[»] chr6 (1 HSPs)
chr6 (521-593)||(11844591-11844661)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 413 - 608
Target Start/End: Complemental strand, 23651774 - 23651591
Alignment:
Q  413 atcatatggttgacccaagtcttcttcctcttttcatttttcactcactagggaatgtcatttgtcggatgtacactctgaattacgtactaattgtata 512  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||    ||||||   | ||    
T  23651774 atcatatggttgacccaagtcttc---ctcttttcatttttcactcactagggaatgtcatttattggatgtacactctaaat----tactaa---tgta 23651685  T
Q  513 tataatattagtatttcatcatggagatttaaaaaatgtcaatatgtcataggatccaaatatcaagaaattggatgaacagcttcaggaaacttt 608  Q
    |||||||||||||||||||||||| |  ||  ||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  23651684 tataatattagtatttcatcatggcgtctt--aaaatgtcaatgtgtcataggatccaaatatcaggaaactggctgaacagcttcaggaaacttt 23651591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 413 - 608
Target Start/End: Complemental strand, 23620429 - 23620246
Alignment:
Q  413 atcatatggttgacccaagtcttcttcctcttttcatttttcactcactagggaatgtcatttgtcggatgtacactctgaattacgtactaattgtata 512  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||    ||||||   | ||    
T  23620429 atcatatggttgacccaagtcttc---ctcttttcatttttcactcactagggaatgtcatttattggatgtacactctaaat----tactaa---tgta 23620340  T
Q  513 tataatattagtatttcatcatggagatttaaaaaatgtcaatatgtcataggatccaaatatcaagaaattggatgaacagcttcaggaaacttt 608  Q
    ||||||||||||||||||||| || |  ||  ||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  23620339 tataatattagtatttcatcacggcgtctt--aaaatgtcaatgtgtcataggatccaaatatcaggaaactggctgaacagcttcaggaaacttt 23620246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 413 - 608
Target Start/End: Complemental strand, 23737208 - 23737025
Alignment:
Q  413 atcatatggttgacccaagtcttcttcctcttttcatttttcactcactagggaatgtcatttgtcggatgtacactctgaattacgtactaattgtata 512  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||    ||||||   | ||    
T  23737208 atcatatggttgacccaagtcttc---ctcttttcatttttcactcactagggaatgtcatttattggatgtacactctaaat----tactaa---tgta 23737119  T
Q  513 tataatattagtatttcatcatggagatttaaaaaatgtcaatatgtcataggatccaaatatcaagaaattggatgaacagcttcaggaaacttt 608  Q
    ||||||||||||||||||||| || |  ||  ||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  23737118 tataatattagtatttcatcacggcgtctt--aaaatgtcaatgtgtcataggatccaaatatcaggaaactggctgaacagcttcaggaaacttt 23737025  T

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Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 413 - 608
Target Start/End: Original strand, 23706528 - 23706712
Alignment:
Q  413 atcatatggtt-gacccaagtcttcttcctcttttcatttttcactcactagggaatgtcatttgtcggatgtacactctgaattacgtactaattgtat 511  Q
    ||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||    ||||    |    
T  23706528 atcatatggtttgacccaagtcttc---ctcttttcatttttcactcactagggaatgtcatttattggatgtacactctaaattac----taatg---t 23706617  T
Q  512 atataatattagtatttcatcatggagatttaaaaaatgtcaatatgtcataggatccaaatatcaagaaattggatgaacagcttcaggaaacttt 608  Q
    |||||||||||||||||||||| || |  ||  ||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  23706618 atataatattagtatttcatcaaggcgtctt--aaaatgtcaatgtgtcataggatccaaatatcaggaaactggctgaacagcttcaggaaacttt 23706712  T

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Target: chr1; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 23621085 - 23620958
Alignment:
Q  24 aattggatgtaattacatacgtcaacgtcaaacacttgacacattttttatcagatgtgttggtctagataggttattacattacataagtatcctcttt 123  Q
    ||||| ||||||| ||||  ||||||| |  ||||||||||||  ||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||    
T  23621085 aattgaatgtaatcacatgagtcaacgccggacacttgacacaactttcatcagatgtgttggtatagataggtttttacattacataagtatcctcatt 23620986  T
Q  124 atgtgatttttacttacatggataatac 151  Q
    ||||||||||||||||||||||||||||    
T  23620985 atgtgatttttacttacatggataatac 23620958  T

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Target: chr1; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 23652430 - 23652303
Alignment:
Q  24 aattggatgtaattacatacgtcaacgtcaaacacttgacacattttttatcagatgtgttggtctagataggttattacattacataagtatcctcttt 123  Q
    ||||| ||||||| ||||  ||||||| |  ||||||||||||  ||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||    
T  23652430 aattgaatgtaatcacatgagtcaacgccggacacttgacacaactttcatcagatgtgttggtatagataggtttttacattacataagtatcctcatt 23652331  T
Q  124 atgtgatttttacttacatggataatac 151  Q
    ||||||||||||||||||||||||||||    
T  23652330 atgtgatttttacttacatggataatac 23652303  T

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Target: chr1; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 23737864 - 23737737
Alignment:
Q  24 aattggatgtaattacatacgtcaacgtcaaacacttgacacattttttatcagatgtgttggtctagataggttattacattacataagtatcctcttt 123  Q
    ||||| ||||||| ||||  ||||||| |  ||||||||||||  ||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||    
T  23737864 aattgaatgtaatcacatgagtcaacgccggacacttgacacaactttcatcagatgtgttggtatagataggtttttacattacataagtatcctcatt 23737765  T
Q  124 atgtgatttttacttacatggataatac 151  Q
    ||||||||||||||||||||||||||||    
T  23737764 atgtgatttttacttacatggataatac 23737737  T

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Target: chr1; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 23705760 - 23705888
Alignment:
Q  73 atcagatgtgttggtctagataggttattacattacataagtatcctctttatgtgatttttacttacatggataatacaaagggcactactttagaaac 172  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |||| |||||||||||  ||    
T  23705760 atcagatgtgttggtttagataggttattacattacataagcatcctcattatgtgatttttacttacatggataacac-aaggtcactactttagtcac 23705858  T
Q  173 ctagtctttatttatgtactttatttacac 202  Q
    | |  ||||| |||||| ||||||||||||    
T  23705859 ccatcctttaattatgtgctttatttacac 23705888  T

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Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 23705983 - 23706040
Alignment:
Q  287 catcctccacagctacttctggacattttgatttctcacctctgctcaatgtaagctc 344  Q
    |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  23705983 catcctccacagttactcctggacattttgatttctcagctctgctcaatgtaagctc 23706040  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 23620951 - 23620902
Alignment:
Q  295 acagctacttctggacattttgatttctcacctctgctcaatgtaagctc 344  Q
    ||||||||| |||||| ||||||||||||| | |||||||||||||||||    
T  23620951 acagctactcctggacgttttgatttctcagccctgctcaatgtaagctc 23620902  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 23652296 - 23652247
Alignment:
Q  295 acagctacttctggacattttgatttctcacctctgctcaatgtaagctc 344  Q
    ||||||||| |||||| ||||||||||||| | |||||||||||||||||    
T  23652296 acagctactcctggactttttgatttctcagccctgctcaatgtaagctc 23652247  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 23706056 - 23706089
Alignment:
Q  347 tgttatttgcatatgtgtggtgtgtgctgtattt 380  Q
    ||||||||||||||||||||||||||||||||||    
T  23706056 tgttatttgcatatgtgtggtgtgtgctgtattt 23706089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 23737730 - 23737681
Alignment:
Q  295 acagctacttctggacattttgatttctcacctctgctcaatgtaagctc 344  Q
    ||||||||| |||||| ||||||||||||| | |||||||||||||||||    
T  23737730 acagctactcctggacgttttgatttctcagccctgctcaatgtaagctc 23737681  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 52809557 - 52809476
Alignment:
Q  84 tggtctagataggttattacattacataagtatcctctttatgtgatttttacttacatggataatacaaagggcactacttt 166  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||| ||||    
T  52809557 tggtttagataggttattacattacataagtatcctc-ttatctgatttctacttatatggataatacaaagggcacttcttt 52809476  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 1922919 - 1922976
Alignment:
Q  441 tcttttcatttttcactcactagggaatgtcatttgtcggatgtacactctgaattac 498  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  1922919 tcttttcatttttcactcactagggaatgtcatttgtcagatgtaaactctgaattac 1922976  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 511 - 593
Target Start/End: Original strand, 54138867 - 54138947
Alignment:
Q  511 tatataatattagtatttcatcatggagatttaaaaaatgtcaatatgtcataggatccaaatatcaagaaattggatgaaca 593  Q
    ||||| ||||||||||||||||||||||| ||||||  | |||||||||| ||||||| ||||||||||||||||| ||||||    
T  54138867 tatatgatattagtatttcatcatggagacttaaaa--tctcaatatgtcgtaggatctaaatatcaagaaattggctgaaca 54138947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 521 - 593
Target Start/End: Original strand, 53285099 - 53285169
Alignment:
Q  521 tagtatttcatcatggagatttaaaaaatgtcaatatgtcataggatccaaatatcaagaaattggatgaaca 593  Q
    ||||||||||||||||||| ||||||  | ||||||||||||||||| |||||||||||||||||| ||||||    
T  53285099 tagtatttcatcatggagacttaaaa--tctcaatatgtcataggatacaaatatcaagaaattggctgaaca 53285169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 545 - 593
Target Start/End: Complemental strand, 52809181 - 52809133
Alignment:
Q  545 aaaatgtcaatatgtcataggatccaaatatcaagaaattggatgaaca 593  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  52809181 aaaatgtcaatatgtcataggatccaaatatcaaggaattggctgaaca 52809133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 450 - 593
Target Start/End: Complemental strand, 48432463 - 48432323
Alignment:
Q  450 ttttcactcactagggaatgtcatttgtcggatgtacactctgaattacgtactaattgtatatataatattagtatttcatcatggagatttaaa---- 545  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||||||||    ||||    |||||| ||| |||||||||||||||||| |||||        
T  48432463 ttttcactcactagggaatgttatttgtcagatgcacactatgaattac----taatg---tatatagtatcagtatttcatcatggagacttaaatata 48432371  T
Q  546 aaatgtcaatatgtcataggatccaaatatcaagaaattggatgaaca 593  Q
    ||||||||||||| |||||||||||| ||| |||||||||| ||||||    
T  48432370 aaatgtcaatatgccataggatccaagtattaagaaattggctgaaca 48432323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 521 - 593
Target Start/End: Complemental strand, 11844661 - 11844591
Alignment:
Q  521 tagtatttcatcatggagatttaaaaaatgtcaatatgtcataggatccaaatatcaagaaattggatgaaca 593  Q
    ||||||||||||||||||| ||||||  | ||||||||||||||||| |||||||||||||||||| ||||||    
T  11844661 tagtatttcatcatggagacttaaaa--tctcaatatgtcataggatacaaatatcaagaaattggctgaaca 11844591  T

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