View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1936_low_8 (Length: 622)

Name: NF1936_low_8
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1936_low_8
NF1936_low_8
[»] chr1 (6 HSPs)
chr1 (12-358)||(33079832-33080183)
chr1 (479-608)||(33079680-33079809)
chr1 (348-529)||(1970506-1970687)
chr1 (348-537)||(2013668-2013858)
chr1 (12-67)||(2014124-2014176)
chr1 (14-78)||(7043872-7043936)
[»] chr4 (1 HSPs)
chr4 (12-56)||(23618425-23618469)
[»] chr3 (2 HSPs)
chr3 (470-506)||(26818696-26818732)
chr3 (12-56)||(47736921-47736965)
[»] chr5 (3 HSPs)
chr5 (177-240)||(24806007-24806070)
chr5 (12-58)||(26349809-26349855)
chr5 (13-58)||(25417798-25417843)
[»] chr7 (1 HSPs)
chr7 (12-73)||(17829300-17829361)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 33080183 - 33079832
Alignment:
Q  12 aatatggctaaaactctaaagtttatgtatgctatgattttatttatatatatttttcttgtcataaagaacaccgaaggtcatccatcttttcannnnn 111  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||         
T  33080183 aatatggctaaaactttaaagtttgtgtatgctatgattttatttatttatatttttcttgtcataaagaacaccgaaggtcatccatcttttcattttt 33080084  T
Q  112 nnn----attttatgaaaataccttctttagttttt-atttagtacataatccattatctcaatttagtcacatcattttattatgttttttcattacag 206  Q
           ||||||||||||||||| ||||||||||| |||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||    
T  33080083 tgtttttattttatgaaaatacctactttagttttttatttcgtacataacctattatctcaatttagtcacatcgttttattatgttttttcattacag 33079984  T
Q  207 catatcctccttgtgaaacagttgctgattgtccggaaagttactttcgaatttataggtgtgagaataacttttgcaggtatagagaagcggtacgacg 306  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33079983 catatcctccttgtgaaacagttgctgattgtccagaaagttactttcgaatttataggtgtgagaataacttttgcaggtatagagaagcggtacgacg 33079884  T
Q  307 gttaaagcccccattccgtaagaaatgacaaaacaaaatggataattgagtg 358  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  33079883 gttaaggcccccattacgtaagaaatgacaaaacaaaatggataattgagtg 33079832  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 479 - 608
Target Start/End: Complemental strand, 33079809 - 33079680
Alignment:
Q  479 ttagttattatgttggcactcaataattgtaggttttatttatatttctttgtgtaattggtgtctcttaaaatgctatgaatattttaaggtggaataa 578  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  33079809 ttagttattatgttggcactcaataattttaggttttatttagatttctttgtgtaattggtgtctcttaaaatactatgagtattttaaggtggaataa 33079710  T
Q  579 tttagtgcaagtctgcactatccaagttat 608  Q
    |||||||||||| |||||||||||||||||    
T  33079709 tttagtgcaagtatgcactatccaagttat 33079680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 348 - 529
Target Start/End: Complemental strand, 1970687 - 1970506
Alignment:
Q  348 ataattgagtgtgaattttatgggtgccaaactcaagagagaacacttacgccatgcaggaaagaaggagttcttacattagcaaaaaatctatgcaatg 447  Q
    ||||| ||||||||||||||||  ||| ||||  ||||||| |||||||||||||||||||||||||||  ||||| ||||| |||||||||||||| |     
T  1970687 ataatcgagtgtgaattttatgaatgcgaaacctaagagagtacacttacgccatgcaggaaagaaggaactcttatattagtaaaaaatctatgcagta 1970588  T
Q  448 taacacttgctagaatttctacggttgccatttagttattatgttggcactcaataattgtaggttttatttatatttcttt 529  Q
    |||| ||||||||||||||||  ||||||||||||||||| ||| | ||| ||||||||||| ||||||||||| |||||||    
T  1970587 taactcttgctagaatttctatagttgccatttagttattgtgtagacacccaataattgtatgttttatttatttttcttt 1970506  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 348 - 537
Target Start/End: Complemental strand, 2013858 - 2013668
Alignment:
Q  348 ataattgagtgtgaattttatgggtgccaaactcaagagagaacacttacgccatgcaggaaagaaggagttcttacattagcaaaaaa-tctatgcaat 446  Q
    ||||| ||||||||||||||| | | ||| ||  ||||||| |||| ||||||||||||| ||||| ||  ||||| ||||| |||||| |||||||| |    
T  2013858 ataatcgagtgtgaattttatcgataccagacctaagagagtacacatacgccatgcagggaagaatgaactcttatattagtaaaaaaatctatgcagt 2013759  T
Q  447 gtaacacttgctagaatttctacggttgccatttagttattatgttggcactcaataattgtaggttttatttatatttctttgtgtaatt 537  Q
     | |  ||||||||||||||||  |||| |||||||| ||| ||||| ||| ||||||||||| ||||||||||| ||||||| |||||||    
T  2013758 attaatcttgctagaatttctatagttgtcatttagtcattgtgttgacacccaataattgtatgttttatttatttttctttttgtaatt 2013668  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 2014176 - 2014124
Alignment:
Q  12 aatatggctaaaactctaaagtttatgtatgctatgattttatttatatatatttt 67  Q
    |||||||||||||||||||||||| ||||   ||| ||||||||||| ||||||||    
T  2014176 aatatggctaaaactctaaagtttgtgta---tattattttatttatgtatatttt 2014124  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 7043936 - 7043872
Alignment:
Q  14 tatggctaaaactctaaagtttatgtatgctatgattttatttatatatatttttcttgtcataa 78  Q
    ||||||| |||||||||||||| | |||| | ||||||||||||| | ||  |||||||||||||    
T  7043936 tatggctgaaactctaaagtttgtttatgttctgattttatttatttctacgtttcttgtcataa 7043872  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 23618469 - 23618425
Alignment:
Q  12 aatatggctaaaactctaaagtttatgtatgctatgattttattt 56  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||    
T  23618469 aatatggctaaaactcttaagtttgtgtatgctatgattatattt 23618425  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 506
Target Start/End: Original strand, 26818696 - 26818732
Alignment:
Q  470 ggttgccatttagttattatgttggcactcaataatt 506  Q
    |||||||||||||||||| ||||||||||||||||||    
T  26818696 ggttgccatttagttattgtgttggcactcaataatt 26818732  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 47736921 - 47736965
Alignment:
Q  12 aatatggctaaaactctaaagtttatgtatgctatgattttattt 56  Q
    |||||| |||||||||| |||||| | ||||||||||||||||||    
T  47736921 aatatgactaaaactctgaagtttttttatgctatgattttattt 47736965  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 24806007 - 24806070
Alignment:
Q  177 acatcattttattatgttttttcattacagcatatcctccttgtgaaacagttgctgattgtcc 240  Q
    |||| |||||||||| |||||||||| |||||||||||  ||||||||| | |||||| |||||    
T  24806007 acattattttattatcttttttcattgcagcatatcctggttgtgaaactgatgctgaatgtcc 24806070  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 26349809 - 26349855
Alignment:
Q  12 aatatggctaaaactctaaagtttatgtatgctatgattttatttat 58  Q
    ||||||||||||||| |||| ||||||| |||| |||||||||||||    
T  26349809 aatatggctaaaactttaaattttatgtttgctctgattttatttat 26349855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 25417798 - 25417843
Alignment:
Q  13 atatggctaaaactctaaagtttatgtatgctatgattttatttat 58  Q
    |||||| ||||||||| |||||| |||||| |||||||||||||||    
T  25417798 atatggttaaaactcttaagtttgtgtatgatatgattttatttat 25417843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 17829361 - 17829300
Alignment:
Q  12 aatatggctaaaactctaaagtttatgtatgctatgattttatttatatatatttttcttgt 73  Q
    |||||||||||||||||||||||| |||||| |||  |||||||| |||   ||||||||||    
T  17829361 aatatggctaaaactctaaagtttgtgtatgttattgttttatttctatccctttttcttgt 17829300  T

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