View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1936_low_9 (Length: 539)
Name: NF1936_low_9
Description: NF1936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1936_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 47534317 - 47533803
Alignment:
| Q |
1 |
acgctccagccacgatagtagaacaattcctgataaa-gtgtagacgatcttgatcaaaagtaagcaaggtcatcaagcaatcaacacatctacgtacct |
99 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47534317 |
acgctccagccacgacagtagaacaattcctgataaaagcgtagacgatcttgatcaaaagtaagcaaggtcatcaagcaatcaacacatctacgtacct |
47534218 |
T |
|
| Q |
100 |
tgcatgaagagcaatctacgtactacttagtatgggctaactgttggacaaaggctttataatgcatcttgccaataatcaaatgaaaggattctattca |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47534217 |
tgcatgaagagcaatctacttactacttagtatgggctaactgttggaaaaaggctttataatgcatcttgccaataatcaaatgaaaggattctattca |
47534118 |
T |
|
| Q |
200 |
agtcagaaaactattttgagagctcctatctctcaaagtagaacatttcaggttcagataaatccaaaagactccaataccttgcatctgaaatgataaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47534117 |
agtcagaaaactattttgagagctcctatctctcaaagtagaacatttcaggttcagataaatccaaaagactccaataccttgcatctgaaatgataaa |
47534018 |
T |
|
| Q |
300 |
ttgtgaaacatagttatggactctcatgtgtgtgcatctagaatttc--aagtctaagtaatttgcaaacaaattcattggtcagtgatttgccaaagat |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47534017 |
ttgtgaaacatagttatggactctcatgtgtgtgcatctagaatttcaaaagtctaagtaatttgcaaacaaattcattggtcagtgatttgccaaagat |
47533918 |
T |
|
| Q |
398 |
ttagagtaccatcagatatgtgcaagaattgcttgataggcaagcaacctnnnnnnntttcggcctttgactcctatgagagaacaaaacaaacttgatg |
497 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47533917 |
ttagagtaccatcagatatgtgaaagaattgcttgataggcaagcaacctaaaaaaatttcggcctcagactcctatgagagaacaaaacaaacttgatg |
47533818 |
T |
|
| Q |
498 |
tgattcatataataa |
512 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47533817 |
tgattcatataataa |
47533803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University