View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937-Insertion-10 (Length: 222)
Name: NF1937-Insertion-10
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 39092774 - 39092567
Alignment:
| Q |
7 |
agttttttaattgaaacaacataagatattatttctgatacatgagatgcatgagtgtagtactctagtaaataatattcgagcaatcttgacccaataa |
106 |
Q |
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| T |
39092774 |
agttttttaattgaaacaacataagatattatttctgatacatgagatgcatgagtgtagtactctagtaaataatattcgagcaatcttgacccaa-aa |
39092676 |
T |
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| Q |
107 |
gagagagaatataagatagttaatccccctgagtctgatcatcaaactacccaaaagaaagagtaccaaaagttgttcatggattccatgaaagtgatat |
206 |
Q |
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| T |
39092675 |
gagagagaatataagatagttaatccccctgagtctgatcatcaaactacccaaaagaaagagtaccaaaagttgttcatggattccatgaaagtgatat |
39092576 |
T |
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| Q |
207 |
ccacaacaa |
215 |
Q |
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| T |
39092575 |
ccacaacaa |
39092567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 39089197 - 39089161
Alignment:
| Q |
179 |
ttgttcatggattccatgaaagtgatatccacaacaa |
215 |
Q |
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|||||||||| |||||| ||||||||||||||||||| |
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| T |
39089197 |
ttgttcatggcttccatcaaagtgatatccacaacaa |
39089161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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