View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1937-Insertion-13 (Length: 388)
Name: NF1937-Insertion-13
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-13 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 15654659 - 15654311
Alignment:
| Q |
8 |
aattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15654659 |
aattgagcatgaaacactaagagaaaatgcagagtcgtggatgaaaaaaactgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgttt |
15654560 |
T |
|
| Q |
108 |
gctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15654559 |
gctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatctg |
15654460 |
T |
|
| Q |
208 |
cattcatctcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15654459 |
cattcatctcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaat |
15654360 |
T |
|
| Q |
308 |
atgtggattggtcacattatttatctccgtaacaagcatgatggtagca |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15654359 |
atgtggattggtcacattatttatctccgtaacaagcatgatggtagca |
15654311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 15645607 - 15645259
Alignment:
| Q |
8 |
aattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15645607 |
aattgagcatgaaacactaagagaaaatgcagagtcgtggatgaaaaaaacggccgagtcttgcatgctaatttcaactgtcattgctaccggagtgttt |
15645508 |
T |
|
| Q |
108 |
gctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
15645507 |
gctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatctg |
15645408 |
T |
|
| Q |
208 |
cattcatctcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15645407 |
cattcatctcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaat |
15645308 |
T |
|
| Q |
308 |
atgtggattggtcacattatttatctccgtaacaagcatgatggtagca |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15645307 |
atgtggattggtcacattatttatctccgtaacaagcatgatggtagca |
15645259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 15624982 - 15624634
Alignment:
| Q |
8 |
aattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgttt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15624982 |
aattgagcatgaaacactaagagaaaacgcagagtcgtggatgaaaaaaactgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgttt |
15624883 |
T |
|
| Q |
108 |
gctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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|
| T |
15624882 |
gctgctgcaactactttaccaggcggtaccgatgattctggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatttg |
15624783 |
T |
|
| Q |
208 |
cattcatctcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaat |
307 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| | |||||||| ||||| |
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|
| T |
15624782 |
cattcatctcatctgcgaccgcgatattgattttcttgtcgattcttgtctcacgttatggagagtacgacttctataaatcactacctttaaaactaat |
15624683 |
T |
|
| Q |
308 |
atgtggattggtcacattatttatctccgtaacaagcatgatggtagca |
356 |
Q |
| |
|
|| ||||||| |||||||| |||||||| ||||||||||||||||||| |
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|
| T |
15624682 |
atctggattgatcacattagctatctccgcaacaagcatgatggtagca |
15624634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 15493864 - 15493519
Alignment:
| Q |
11 |
tgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgct |
110 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
15493864 |
tgagcatgaaaaactaagggaagatgcagagtcttggatgaaaaaaactgccgagtcttgtatgctaatttcaacagtcattgctactggagtgttcgct |
15493765 |
T |
|
| Q |
111 |
gctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctgcat |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||||||||| |||| ||||| ||| ||||||||||||||||| |||||||||| ||| ||||| |
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|
| T |
15493764 |
gctgcaactactttaccaggtggtaccgatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagacacatttgcat |
15493665 |
T |
|
| Q |
211 |
tcatctcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaatatg |
310 |
Q |
| |
|
| |||||| || |||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
15493664 |
ttatctcagcttcgaccgcgatattgatattcttgtctattcttgtatcgcgttatcgagagtatgacttctataaatcactgcctttaaagctaatatt |
15493565 |
T |
|
| Q |
311 |
tggattggtcacattatttatctccgtaacaagcatgatggtagca |
356 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
15493564 |
tggattgatcacattattcatctccataacaagcatgatggtagca |
15493519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 15517690 - 15517343
Alignment:
| Q |
11 |
tgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgct |
110 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||| |||||| |||| ||||| || |||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
15517690 |
tgagcatgaaaaactaagggaagatgcagagtcttggatgaaaaaaactgcggagtcgtgtatgctaatttcaacagtcattgctaccggagtgttcgct |
15517591 |
T |
|
| Q |
111 |
gctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctgcat |
210 |
Q |
| |
|
|||||| |||||||||||| |||| |||| || | ||||||||| ||| |||||| ||| ||||||| |||| |||| ||||||||||||||||||| | |
|
|
| T |
15517590 |
gctgcagttactttaccaggtggtatcgataacacaggaaaaccaaactttttgaagaaaccatcatttttggggtttgcaatatcagatgcatctgcgt |
15517491 |
T |
|
| Q |
211 |
tcatctcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaatatg |
310 |
Q |
| |
|
|||| |||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |
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|
| T |
15517490 |
tcatttcatcttcgacagccatattgattttcttgtctattcttgtctcgcgttatggagagcgtgacttctataaatcactacctttaaagctaatatt |
15517391 |
T |
|
| Q |
311 |
tggattggtcacattatttatctccgtaacaagcatgatggtagcact |
358 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
15517390 |
tggattgatcacattattcatctccataacaagcatgatggtagcact |
15517343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 15534203 - 15533856
Alignment:
| Q |
11 |
tgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgct |
110 |
Q |
| |
|
|||||||| || |||||| || |||||||||| |||||| |||| ||||| || |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
15534203 |
tgagcatgcaaaactaagggaggatgcagagtcttggatgaaaaaaactgcggagtcatgtatgctaatttcaacagtcattgctaccggagtgttcgct |
15534104 |
T |
|
| Q |
111 |
gctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctgcat |
210 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| | ||||||||| |||| |||| |||||| |||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
15534103 |
gctgcagttactttaccaggtggtaccgatgacaccggaaaaccaaactagttgacgaaaacaccattcttggtatttgcaacatcagatgcatctgcat |
15534004 |
T |
|
| Q |
211 |
tcatctcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctataaatcattgcctttaaagctaatatg |
310 |
Q |
| |
|
|||| |||||| |||| || |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
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|
| T |
15534003 |
tcatttcatcttcgaccgccatattgattttcttgtctattcttgtctcgcgttatggagagcgcgatttctataaatcactgcctttaaagctaatatt |
15533904 |
T |
|
| Q |
311 |
tggattggtcacattatttatctccgtaacaagcatgatggtagcact |
358 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
15533903 |
tggattgatcacattattcatctccataacaagcatgatgatagcact |
15533856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 185 - 356
Target Start/End: Complemental strand, 15592012 - 15591841
Alignment:
| Q |
185 |
gttttcaatatcagatgcatctgcattcatctcatctgcgactgcgatattgattttcttgtctattcttgtctcgcgttatggagagtatgacttctat |
284 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||||||| |||| | | ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
15592012 |
gtttgcaatatcagatgcacttgcatttatctcatcttcgacaacattgttgatattcttgtctattcttgtctcgcggtatggagagtatgacttctat |
15591913 |
T |
|
| Q |
285 |
aaatcattgcctttaaagctaatatgtggattggtcacattatttatctccgtaacaagcatgatggtagca |
356 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
15591912 |
aaatcactgccttcaaagctaatatttggattgatcacattattcatctccataacaagcatgatggtagca |
15591841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 15601386 - 15601210
Alignment:
| Q |
12 |
gagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctg |
111 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| | || |||||||| |||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
15601386 |
gagcatcaaaaactaagagaaaatgcagagtcatggatgaagaaaaccgcagagtcttgtatgctaatttcagccgtcattgctaccggagtgtttgctg |
15601287 |
T |
|
| Q |
112 |
ctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttt |
188 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| | ||||||||| | |||||||| ||| ||||||| ||||||||| |
|
|
| T |
15601286 |
ctgcaactactgtaccaggcggtatcgatgacacaggaaaaccaaattatttgaagaaaccatcatttttggtgttt |
15601210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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