View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937-Insertion-14 (Length: 272)
Name: NF1937-Insertion-14
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-14 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 47980372 - 47980604
Alignment:
| Q |
7 |
cttaagacaggtctttttgactatgtttgggtgcaattttacaacaatccaccttgtcaatattcttctgcagatgttggtaatcttgaaaatgcatgga |
106 |
Q |
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| T |
47980372 |
cttaagacaggtctttttgactatgtttgggtgcaattttacaacaatccaccttgtcaacattcttctgcagatgttggtaatcttgaaaatgcatgga |
47980471 |
T |
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| Q |
107 |
aagaatggattaatggtattccagcaacaaagattttcttaggattaccagcatctccacaggctgcaggaagtggttttgtttctgttgctgacttgac |
206 |
Q |
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| T |
47980472 |
aagaatggattaatgatattccagcaacaaagattttcttaggattaccagcatctccacaggctgcaggaagtggttttgtttctgttgctgacttgac |
47980571 |
T |
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| Q |
207 |
atcgaaagtacttcctatcattaaaggtagcac |
239 |
Q |
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| T |
47980572 |
atcaaaagtacttcctatcattaaaggtagcac |
47980604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 48222384 - 48222343
Alignment:
| Q |
13 |
acaggtctttttgactatgtttgggtgcaattttacaacaat |
54 |
Q |
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| T |
48222384 |
acaggactatttgactatgtttgggttcaattttacaacaat |
48222343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 44838275 - 44838331
Alignment:
| Q |
13 |
acaggtctttttgactatgtttgggtgcaattttacaacaatccaccttgtcaatat |
69 |
Q |
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| T |
44838275 |
acaggtctttttgactttgtttgggtacaattttacaataatcctccttgtcaatat |
44838331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 24367541 - 24367486
Alignment:
| Q |
13 |
acaggtctttttgactatgtttgggtgcaattttacaacaatccaccttgtcaata |
68 |
Q |
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||||| |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |
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| T |
24367541 |
acaggactttttgattatgtttgggtacaattctacaacaaccctccttgtcaata |
24367486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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