View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1937-Insertion-16 (Length: 421)
Name: NF1937-Insertion-16
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-16 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 2658212 - 2658618
Alignment:
| Q |
8 |
ctacaagctagccacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacattattttcct |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2658212 |
ctacaagctagctacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacattattttcct |
2658311 |
T |
|
| Q |
108 |
gtcaatctttccaactcttaaatacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccatttttcccacaaacctcacactt |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2658312 |
gtcaatctttccaactcttaaatataaacctccacttgcgagtttgaagctattcaccgatcgttcaacatccaccatttttcccacaaacctcacactt |
2658411 |
T |
|
| Q |
208 |
ttcccttggcatggtagatttatacatgaaagtggnnnnnnncaatctaatttattcttctaatttaatattcacattaaattctgcagatttagagctt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
2658412 |
ttcccttggcatggtagatttatacatgaaagtggtttttttcaatctaatttattcttttaatttaatattcacattaaattctgcagatttagaactt |
2658511 |
T |
|
| Q |
308 |
ataataacgagtgttttctagtgtcataagaacattagagtgtttatgccttaatttgaaaatataaaatcaagagcttataatgaaacccacacacaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2658512 |
ataataacgagtgttttctagtgtcataaaaacattagagtgtttatgccttaatttgaaaatataaaatcaagagcttataatgaaacccacacacaaa |
2658611 |
T |
|
| Q |
408 |
caacaaa |
414 |
Q |
| |
|
||||||| |
|
|
| T |
2658612 |
caacaaa |
2658618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 38444745 - 38444338
Alignment:
| Q |
8 |
ctacaagctagccacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacattattttcct |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38444745 |
ctacaagctagccacgtcatcctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacattattttcct |
38444646 |
T |
|
| Q |
108 |
gtcaatctttccaactcttaaa-tacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccatttttcccacaaacctcacact |
206 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
38444645 |
gtcaatctttccaacttttaaagtacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccattttttccacaaacctcacact |
38444546 |
T |
|
| Q |
207 |
tttcccttggcatggtagatttatacatgaaagtggnnnnnnncaatctaatttattcttctaatttaatattcacattaaattctgcagatttagagct |
306 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38444545 |
tttcccttggcatggtagattaatacatgaaagtggtttttttcaatctaatttattcttctaatttaatattcacattgaattctgcagatttagagct |
38444446 |
T |
|
| Q |
307 |
tataataacgagtgttttctagtgtcataagaacattagagtgtttatgccttaatttgaaaatataaaatcaagagcttataatgaaacccacacacaa |
406 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38444445 |
tataataacaagtgttttctagtgtcataggaacattagagtgtttatgccttaatttgaaaatataaaatcaagagcttataatgaaacccacacacaa |
38444346 |
T |
|
| Q |
407 |
acaacaaa |
414 |
Q |
| |
|
|||||||| |
|
|
| T |
38444345 |
acaacaaa |
38444338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 4242445 - 4242097
Alignment:
| Q |
10 |
acaagctagccacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacattattttcctgt |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||| |||| | |
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|
| T |
4242445 |
acaagctagccacatcaccctatttttaagacttgatacttgcaaccggctcttttggttaagaaacatgaaatcgatttgcataacatattttttggat |
4242346 |
T |
|
| Q |
110 |
caatctttccaactcttaaa-tacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccatttttcccacaaacctcacacttt |
208 |
Q |
| |
|
||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||| ||||||| ||| |||||||||||| | |||||| |
|
|
| T |
4242345 |
caatctttctctctcttaaactacaaacttcctttcacgagtttgaagctattcacctatcgttccacaaccaccatttttc----------ctcacttt |
4242256 |
T |
|
| Q |
209 |
tcccttggcatggtagatttatacatgaaagtggnnnnnnncaatctaatttattcttctaatttaatattcacattaaattctgcagatttagagctta |
308 |
Q |
| |
|
|||||||| ||||||||||||| |||||| | ||||||||||||||||||||||| ||| ||||| ||| ||||||||| || |
|
|
| T |
4242255 |
------------gtagatttgtacatgaaagtggtttttttcaatctga-ttattcttctaatttaatattcaaattgaattcagcaaatttagagcata |
4242169 |
T |
|
| Q |
309 |
taataacgagtgttttctagtgtcataagaacattagagtgtttatgccttaatttgaaaatataaaatcaa |
380 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
4242168 |
taataaggagtgttgtctagtgtcacaagaacattagagtgtctatgtcttaattacaaaatataaaatcaa |
4242097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 259 - 414
Target Start/End: Complemental strand, 4234285 - 4234130
Alignment:
| Q |
259 |
ttattcttctaatttaatattcacattaaattctgcagatttagagcttataataacgagtgttttctagtgtcataagaacattagagtgtttatgcct |
358 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||| ||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||| || |
|
|
| T |
4234285 |
ttattcttctaatttaatattcaaattgaattcagcaaatttagagcatataataaggagtgttttctagtgtcacaagaacattagagtgtctatgtct |
4234186 |
T |
|
| Q |
359 |
taatttgaaaatataaaatcaagagcttataatgaaacccacacacaaacaacaaa |
414 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | ||||||| |||||| |
|
|
| T |
4234185 |
taattactaaatataaaatcaagagcttataatgaaacggatacacaaaaaacaaa |
4234130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 4234544 - 4234365
Alignment:
| Q |
10 |
acaagctagccacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacattattttcctgt |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||| ||||| | |
|
|
| T |
4234544 |
acaagctagccacatcaccctatttttaagacttgatacttgcaaccggctcttttggttaagaaacatgaaatcgatttgcataacatacttttctgat |
4234445 |
T |
|
| Q |
110 |
caatctttccaactcttaaa-tacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccatttt |
188 |
Q |
| |
|
||||||||| |||||||| ||||||| |||| ||| |||||||||| |||||||| ||||||| ||| |||||||||| |
|
|
| T |
4234444 |
caatctttctctctcttaaactacaaacttccagtcatgagtttgaagttattcacctatcgttccacaaccaccatttt |
4234365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 310 - 414
Target Start/End: Original strand, 42837033 - 42837137
Alignment:
| Q |
310 |
aataacgagtgttttctagtgtcataagaacattagagtgtttatgccttaatttgaaaatataaaatcaagagcttataatgaaacccacacacaaaca |
409 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42837033 |
aatatcgaatgttttctagtgtcataagaacattagagtgtttatgccttaatttgaaaatataaaatcaagagcttataatgaaacccacacacaaaca |
42837132 |
T |
|
| Q |
410 |
acaaa |
414 |
Q |
| |
|
||||| |
|
|
| T |
42837133 |
acaaa |
42837137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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