View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937-Insertion-19 (Length: 460)
Name: NF1937-Insertion-19
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-19 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 336
Target Start/End: Original strand, 34761196 - 34761519
Alignment:
| Q |
7 |
acctgctttataagtctggttagtcttcgaggggtggatagaatctgagacaatagagtgatgagacaatgctggagtagttgaagtaagaagaagtaac |
106 |
Q |
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| T |
34761196 |
acctgctttataagtctggttagtcttcgaggggtggatagaatctgagacaatagagtgatgagacaatgctggagtagttgaagtaagaagaagtaac |
34761295 |
T |
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| Q |
107 |
aacaaagaaacaaaaacaggtagcatagatggagtgttttgagaagtggacaatatgagagaatggttgtgtgtacatgcttgttttgaggcaatatggt |
206 |
Q |
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| T |
34761296 |
aacaaagaaacaaaaacaggtagcataggtggagtgttttgagaagtggacaatatgagagaatggttgtgtgtacatgcttgttttgaggcaatatggt |
34761395 |
T |
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| Q |
207 |
gttgtctttttgtgtggtgtgctacaaaatatggttctttcctatgtcttttcaaggaaactgagtattcctttgcttccattctaattctaattctaaa |
306 |
Q |
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| T |
34761396 |
gttgtctttttgtgtggtgtgctacaaaatatggttctttcctatgtcttttcaaggaaactgagtattcctttgcttcc------attctaattctaaa |
34761489 |
T |
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| Q |
307 |
cagaacaattaccaagaagtgagtgatagt |
336 |
Q |
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| T |
34761490 |
cagaacaattaccaagaagtgagtgatagt |
34761519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 354 - 434
Target Start/End: Original strand, 34761547 - 34761627
Alignment:
| Q |
354 |
tagtggtttgaattttatgatcatacatcacaccaacatataaaatagagtaagaatctactactattaaggtagcactgt |
434 |
Q |
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| T |
34761547 |
tagtggtttgaattttatgatcatacatcacaccaacatataaaatagagtaagaatctactactattaaggtaggactgt |
34761627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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