View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937-Insertion-21 (Length: 294)
Name: NF1937-Insertion-21
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-21 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 66 - 294
Target Start/End: Complemental strand, 18196942 - 18196717
Alignment:
| Q |
66 |
tagggaggtacaatggcttatgtgtttctgtgaagatgttttataaaggtcaacaaagttggaaagcaatgccacatcagaaaagtggaagttttgtgag |
165 |
Q |
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| T |
18196942 |
tagggaggtacaatggtttatgtgtttctgtgaagaagttttataaaggtcaa-aaagttggaaagcaatgccacatcagaaaagtggaagttttgtgag |
18196844 |
T |
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| Q |
166 |
ccacaaatttttgtggcctgtgagatcttattgtgcagatggattcatacacttaattgtaaagatatattgttgttctcttctgcctaccctttttcat |
265 |
Q |
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| T |
18196843 |
ccacaaatttttgtggcctgtgagatcttagtgtgcagatggattcacacacttaattgtaaag--atagtgttgttctcttctgcctaccctttctcat |
18196746 |
T |
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| Q |
266 |
ccatgtcacctcctttttcaacttttgac |
294 |
Q |
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| T |
18196745 |
ccatgtcacctcctttttcaacttttgac |
18196717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 67 - 290
Target Start/End: Complemental strand, 18192407 - 18192187
Alignment:
| Q |
67 |
agggaggtacaatggcttatgtgtttctgtgaagatgttttataaaggtcaacaaagttggaaagcaatgccacatcagaaaagtggaagttttgtgagc |
166 |
Q |
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| T |
18192407 |
agggaggtactatggtttatgtgtttatgtgaagaagttttataaaggtcaa-aaagttggaaagcaatgccacatcagaaaagtggaagttttgtgagc |
18192309 |
T |
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| Q |
167 |
cacaaatttttgtggcctgtgagatcttattgtgcagatggattcatacacttaattgtaaagatatattgttgttctcttctg-cctaccctttttcat |
265 |
Q |
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| T |
18192308 |
cacaaattgctgtgg-ctgtgagatcttagtgtgcagctggattcacccacgtaattgtaaag--atagtgtttttcttttctgtcctaccctttttcat |
18192212 |
T |
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| Q |
266 |
ccatgtcacctcctttttcaacttt |
290 |
Q |
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| T |
18192211 |
ccatgtcacctcctttttcaacttt |
18192187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 18187396 - 18187249
Alignment:
| Q |
67 |
agggaggtacaatggcttatgtgtttctgtgaagatgttttataaaggtcaacaaagttggaa---agcaatgccacatcagaaaagtggaagttttgtg |
163 |
Q |
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| T |
18187396 |
agggaggtacaatggtttatgtgtttatgtgaagaggttttatataggtcaa-aaagttagaagaaagccaagccacatcagaaaagggaaagttttgtg |
18187298 |
T |
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| Q |
164 |
agccacaaatttttgtggcctgtgagatcttattgtgcagatggattca |
212 |
Q |
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| T |
18187297 |
agccacaaattgttttggcctatgagatcttagtgttcagctggattca |
18187249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 18197000 - 18196970
Alignment:
| Q |
8 |
ctttgttctgtttacctgatagtgaagagtt |
38 |
Q |
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| T |
18197000 |
ctttgttctgtttacctgatagtgaagagtt |
18196970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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