View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937-Insertion-22 (Length: 505)
Name: NF1937-Insertion-22
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-22 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 280319 - 280102
Alignment:
| Q |
9 |
atagaaccaatggtaattgtttggatagacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaaga |
108 |
Q |
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| T |
280319 |
atagaaccaatggtaattgtttggacagacgcattgaaaggggttgcatcaaaacccatttcctcaaacaaaaccaacgtgtttacatcattatttaaga |
280220 |
T |
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| Q |
109 |
atgaccttggcacatggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatcacatgtgtcactgca |
208 |
Q |
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| T |
280219 |
atgaccttggcacatggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatcacatgtgtcactgca |
280120 |
T |
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| Q |
209 |
tcctttattttcagcaag |
226 |
Q |
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|||||||||||||||||| |
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| T |
280119 |
tcctttattttcagcaag |
280102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 290657 - 290571
Alignment:
| Q |
35 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
121 |
Q |
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| T |
290657 |
agacacattgaaagggccttcacctagacccagctcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttggcac |
290571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 227 - 470
Target Start/End: Original strand, 32073630 - 32073875
Alignment:
| Q |
227 |
acatccaaagatgcccc-ccaaaaaccttaggacaaacccctagcacgacaaaccaagcaaaagggaacgcccaaggcgacaccaaaaagcacctgcgac |
325 |
Q |
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| T |
32073630 |
acatccaaagatgcccccccaaaaacattaggacaaaccccttacccgacaaaccaagcaaaggggaacgcccaacgcgacaccaaaaagcacctgcgac |
32073729 |
T |
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| Q |
326 |
agaaaaagaaaaacacaagcaccaaaccaaggctacaagaaggcaaagaacaggccaccgaccaagcacctgcagaaaaaggagaac-taaaaaagaaac |
424 |
Q |
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||||||||||||||| |||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32073730 |
agaaaaagaaaaacataagcaccagaccaaggccacaagaaggcaaagaatacgccaccgaccaagcacctgcagaaaaaggagaacaaaaaaaagaaac |
32073829 |
T |
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| Q |
425 |
ccaggaagccaatccggaaaagaggagccaaaggacccccacccaa |
470 |
Q |
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| T |
32073830 |
ccaggaagccaagccagaaaggaggagccaaaggacccccacccaa |
32073875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 24525709 - 24525623
Alignment:
| Q |
35 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
121 |
Q |
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| T |
24525709 |
agacacattgaaagggccttcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24525623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 24532354 - 24532295
Alignment:
| Q |
62 |
acccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
121 |
Q |
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||||| |||||||||||| ||||| ||||||||||| |||| ||||||| ||||||||| |
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| T |
24532354 |
acccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24532295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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