View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937-Insertion-23 (Length: 568)
Name: NF1937-Insertion-23
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Complemental strand, 48436463 - 48435904
Alignment:
| Q |
8 |
aacacaatacaccactttcaagtcattatattctaccgtatagttaataaagatagttttggaacaaatgaagtaataaactaatcaactgtcatagaaa |
107 |
Q |
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| T |
48436463 |
aacacaatacaccactttcaagtcattatattctattgtatagttaataaagatagttttggaacaaatgaagtaataaactaatcaactgtcatagaaa |
48436364 |
T |
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| Q |
108 |
tcaattatcacatgacatgaaatgtttcattgtttgtttcagagagtatttggtgtgaagccaatagcagactctactgatcacctaaactcagctctat |
207 |
Q |
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| T |
48436363 |
tcaattatcacatgacatgaaatgtttcattgtttgtttcagagagtatttggtgtgaagccaatagcagactctactgatcacctaaactcagctctat |
48436264 |
T |
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| Q |
208 |
accttcaagtgagcattattagtcaagcactcatctttgtgacaaggtcaaggagttggtcttatgtcgaacgtcctggcttgttgcttcttgtagcctt |
307 |
Q |
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| T |
48436263 |
accttcaagtgagcattattagtcaagcactcatctttgtgacaaggtcaaggagttggtcttatgtcgaacgtcctggcttgttgcttcttgtagcctt |
48436164 |
T |
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| Q |
308 |
ctttgctgcacagttggttagtcgtccnnnnnnnnctacctacaacttgaaatttagtaaatcagcattctaatctttg-aaattgtaagcatgcgtcgt |
406 |
Q |
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| T |
48436163 |
ctttgctgcacagttggttagtc--ctttttttttctacctacaacttgaaatttagtaaatcagcattctaatctttgaaaattgtaagcatccgtcgt |
48436066 |
T |
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| Q |
407 |
tttagtccctcgaattacgaaacaacactttagtctcttaaattaaagtattaaacaattccaattaatttagtcaaacaattttaaagtttttattgtt |
506 |
Q |
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| T |
48436065 |
tttagtccctcgaattacgaaacaacactttagtctcttaaattaaagtattaaacaattccaattaatttagtcaaacaattttaaagtttttattgtt |
48435966 |
T |
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| Q |
507 |
tgtgaaattaaacttttgtatatttgtgaattattgaacttaggtggcaactgtcattgctg |
568 |
Q |
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| T |
48435965 |
tgtgaaattaaacttttgtatatttgtgaattattgaacttaggtggcaactgtcattgctg |
48435904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 21980002 - 21979867
Alignment:
| Q |
195 |
aactcagctctataccttcaagtgagcattattagtcaagcactcatctttgtgacaaggtcaaggagttggtcttatgtcgaacgtcctggcttgttgc |
294 |
Q |
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| T |
21980002 |
aactcagctctctacctccaagtgagtatcattagtcaggcacttatctttgtgaccaggtcaagaagctggtcattcgtcgagcgccctggtttgatgc |
21979903 |
T |
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| Q |
295 |
ttcttgtagccttctttgctgcacagttggttagtc |
330 |
Q |
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| T |
21979902 |
ttcttggagccttcattgctgcacaattggttagtc |
21979867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 45196871 - 45196795
Alignment:
| Q |
207 |
taccttcaagtgagcattattagtcaagcactcatctttgtgacaaggtcaaggagttggtcttatgtcgaacgtcc |
283 |
Q |
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|||||||||||||| | | | |||||||| ||||||||||| ||| | |||||||| ||||||| ||||||||||| |
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| T |
45196871 |
taccttcaagtgagtactgtaagtcaagctctcatctttgttacacgctcaaggagctggtctttcgtcgaacgtcc |
45196795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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