View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937-Insertion-3 (Length: 553)
Name: NF1937-Insertion-3
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 32921187 - 32920952
Alignment:
| Q |
8 |
ccttcaactctcaaggtaaccaaaacaaaccctttaacttctctgatcatataacttcaattctaattcttaaccattcaatcatatgcatatgcatgca |
107 |
Q |
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| T |
32921187 |
ccttcaactctcaaggtaaccaaaacaaaccctttcacttctctgatcatataacttcaattctaattcttaaccattcaatcatatgcatatgaatgca |
32921088 |
T |
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| Q |
108 |
caggttatcttgttattgaatctttttctagtaaggatgaaattgatagcatggtaaagaggatggaacagttggtcgatcaatttgatccttcttccac |
207 |
Q |
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| T |
32921087 |
caggttatcttgttattgaatctttttctagtaaggatgaaattgatagcatggtaaagaggatggaacagttagtcgatcaatttgatccttcttccac |
32920988 |
T |
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| Q |
208 |
cgcctctattttctccaccaaaaaccaagttagtta |
243 |
Q |
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| T |
32920987 |
cgcctctattttctccaccaaaaaccaagttagtta |
32920952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 315 - 394
Target Start/End: Complemental strand, 32920880 - 32920801
Alignment:
| Q |
315 |
cagcaacagttgactgatgattatttcttcgagagcgctgaaaacatttcgttcttctttgagggtattcataaaaattc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32920880 |
cagcaacagttgactgatgattatttcttcgagagcgctgaaaacatttcgttcttctttgagggtattcataaaaattc |
32920801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 481 - 552
Target Start/End: Complemental strand, 32920706 - 32920635
Alignment:
| Q |
481 |
gggttagagaaagcttttggtgatgatggtaacttaaagcagccaaagcaattatccctcaacaaagttggc |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32920706 |
gggttagagaaagcttttggtgatgatggtaacttaaagcagccaaagcaattatccctcaacaaagttggc |
32920635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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