View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937-Insertion-5 (Length: 551)
Name: NF1937-Insertion-5
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Original strand, 1702011 - 1702550
Alignment:
| Q |
7 |
agttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacact |
106 |
Q |
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| T |
1702011 |
agttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcactatatcagcccaccgtacact |
1702110 |
T |
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| Q |
107 |
cccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgtt |
206 |
Q |
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| T |
1702111 |
cccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgtt |
1702210 |
T |
|
| Q |
207 |
atgccttccaaatggcggtgtatttaataaatcgcatgacaacaacacatcttaaaaacaaatgtcctaatgaaattctgtttggttccactcctaatta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1702211 |
atgccttccaaatggcggtgtatttaataaatcgcatgccaacaacacatcttaaaaacaaatgtcctcatgaaattctgtttggttccactcctaatta |
1702310 |
T |
|
| Q |
307 |
tcttaatcttggagtctttggatatctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggc |
406 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1702311 |
tcttaatcttcgagtctttggatgtctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggc |
1702410 |
T |
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| Q |
407 |
tattctacacaacaaagttggctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctat-caatt |
505 |
Q |
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| T |
1702411 |
tactctacacaac-atcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctttccattt |
1702509 |
T |
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| Q |
506 |
ttattgaatcttttatgcctcgtccacgtcttctattttaaa |
547 |
Q |
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| T |
1702510 |
ttattgaatc-tttatgcctcgtccacgtcttctattttaaa |
1702550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 5400760 - 5400962
Alignment:
| Q |
20 |
tacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattg |
119 |
Q |
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| T |
5400760 |
tacactgatggtggaactgaatactttaaactcaagccatatttcaatacacatggaatatcccattacattagcccaccttatactcctgaacacattg |
5400859 |
T |
|
| Q |
120 |
gtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaat |
219 |
Q |
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| T |
5400860 |
gcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaat |
5400959 |
T |
|
| Q |
220 |
ggc |
222 |
Q |
| |
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||| |
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| T |
5400960 |
ggc |
5400962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 3541735 - 3541937
Alignment:
| Q |
20 |
tacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattg |
119 |
Q |
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||||| |||||||| ||||||||| | ||||||||||||||| | || | ||||| ||||| || | || |||||||| || ||||| ||||| |||| |
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| T |
3541735 |
tacactgatggtggaactgaatactttaaactcaagccatatttcaatacacatggaatatcccattacattagcccaccttatactcctgaacacattg |
3541834 |
T |
|
| Q |
120 |
gtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaat |
219 |
Q |
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| T |
3541835 |
gcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaat |
3541934 |
T |
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| Q |
220 |
ggc |
222 |
Q |
| |
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||| |
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| T |
3541935 |
ggc |
3541937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 26592339 - 26592278
Alignment:
| Q |
95 |
ccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaac |
156 |
Q |
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| T |
26592339 |
ccaccttacactcctgaacatattggcattgcagaacgcaaacattgccatatagtcgaaac |
26592278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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