View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1937-Insertion-7 (Length: 80)

Name: NF1937-Insertion-7
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1937-Insertion-7
NF1937-Insertion-7
[»] chr2 (4 HSPs)
chr2 (18-75)||(41858621-41858678)
chr2 (8-51)||(9647933-9647976)
chr2 (8-55)||(9579029-9579075)
chr2 (8-47)||(38429799-38429838)
[»] chr7 (2 HSPs)
chr7 (8-54)||(28542211-28542257)
chr7 (8-47)||(36514533-36514572)
[»] chr6 (2 HSPs)
chr6 (8-53)||(4948635-4948680)
chr6 (8-53)||(4955606-4955651)
[»] chr5 (3 HSPs)
chr5 (8-41)||(30588374-30588407)
chr5 (8-55)||(5848404-5848451)
chr5 (8-47)||(16347706-16347745)
[»] chr4 (2 HSPs)
chr4 (8-52)||(20105799-20105843)
chr4 (8-55)||(40933224-40933271)
[»] chr8 (2 HSPs)
chr8 (8-55)||(28239087-28239134)
chr8 (8-47)||(30456539-30456578)
[»] chr3 (1 HSPs)
chr3 (8-47)||(26490232-26490271)
[»] chr1 (1 HSPs)
chr1 (8-47)||(8671835-8671874)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 41858678 - 41858621
Alignment:
Q  18 atccaacgcaacatccttgtctccgctacatttatttttccccttcccccaacaaagt 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41858678 atccaacgcaacatccttgtctccgctacatttatttttccccttcccctaacaaagt 41858621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 9647933 - 9647976
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctacattta 51  Q
    |||||||||||||||||||||||||||  |||| ||||||||||    
T  9647933 cttaccacacatccaacgcaacatcctcatctctgctacattta 9647976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 9579029 - 9579075
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctacatttatttt 55  Q
    ||||||||||||||||||||||||| || ||||| ||||| |||||||    
T  9579029 cttaccacacatccaacgcaacatctttatctcc-ctacacttatttt 9579075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 38429838 - 38429799
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctaca 47  Q
    |||||||| ||||||||||||||||||  |||||||||||    
T  38429838 cttaccactcatccaacgcaacatcctcatctccgctaca 38429799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 28542211 - 28542257
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctacatttattt 54  Q
    ||||||||||||||||||||||| |||  ||||||||||| ||||||    
T  28542211 cttaccacacatccaacgcaacaccctcatctccgctacacttattt 28542257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 36514533 - 36514572
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctaca 47  Q
    |||||||||||||||||||||||||||  |||| ||||||    
T  36514533 cttaccacacatccaacgcaacatcctcatctctgctaca 36514572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 4948635 - 4948680
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctacatttatt 53  Q
    |||||||||||||||| ||||||||||  ||||||||||| |||||    
T  4948635 cttaccacacatccaaagcaacatcctaatctccgctacacttatt 4948680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 4955606 - 4955651
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctacatttatt 53  Q
    |||||||||||||||| ||||||||||  ||||||||||| |||||    
T  4955606 cttaccacacatccaaagcaacatcctaatctccgctacacttatt 4955651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 30588407 - 30588374
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctcc 41  Q
    |||||||||||||| |||||||||||||||||||    
T  30588407 cttaccacacatcccacgcaacatccttgtctcc 30588374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 5848404 - 5848451
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctacatttatttt 55  Q
    |||||||||||||||| ||||||||||  |||| |||||| |||||||    
T  5848404 cttaccacacatccaatgcaacatcctcatctctgctacacttatttt 5848451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 16347706 - 16347745
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctaca 47  Q
    |||||||| ||||||||||||||||||  |||||||||||    
T  16347706 cttaccactcatccaacgcaacatcctcatctccgctaca 16347745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 20105799 - 20105843
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctacatttat 52  Q
    ||||||||||||||| ||||||||| |  ||||||||||||||||    
T  20105799 cttaccacacatccatcgcaacatcatcatctccgctacatttat 20105843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 40933224 - 40933271
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctacatttatttt 55  Q
    |||||||||||| ||||||||||||||  ||| ||||||| |||||||    
T  40933224 cttaccacacattcaacgcaacatcctcatctacgctacacttatttt 40933271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 28; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 28239087 - 28239134
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctacatttatttt 55  Q
    |||| |||||||||||| |||||||||||||||| ||||  |||||||    
T  28239087 cttatcacacatccaacacaacatccttgtctccactactcttatttt 28239134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 30456539 - 30456578
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctaca 47  Q
    |||||||||||||||||||||||||||  |||| ||||||    
T  30456539 cttaccacacatccaacgcaacatcctcatctctgctaca 30456578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 26490271 - 26490232
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctaca 47  Q
    |||||||| ||||||||||||||||||  |||||||||||    
T  26490271 cttaccactcatccaacgcaacatcctcatctccgctaca 26490232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 8671874 - 8671835
Alignment:
Q  8 cttaccacacatccaacgcaacatccttgtctccgctaca 47  Q
    |||||||| ||||||||||||||||||| |||| ||||||    
T  8671874 cttaccactcatccaacgcaacatccttatctctgctaca 8671835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University