View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1937-Insertion-8 (Length: 513)

Name: NF1937-Insertion-8
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1937-Insertion-8
NF1937-Insertion-8
[»] chr7 (6 HSPs)
chr7 (215-425)||(1774586-1774796)
chr7 (178-424)||(34144411-34144649)
chr7 (217-405)||(24977213-24977401)
chr7 (217-343)||(24976973-24977099)
chr7 (148-224)||(34144329-34144405)
chr7 (217-357)||(3270607-3270745)
[»] chr6 (2 HSPs)
chr6 (216-367)||(6889394-6889545)
chr6 (231-321)||(9664974-9665063)
[»] chr1 (5 HSPs)
chr1 (217-424)||(3222945-3223143)
chr1 (229-424)||(38010667-38010863)
chr1 (217-424)||(26542354-26542552)
chr1 (215-266)||(1796903-1796954)
chr1 (281-360)||(47431147-47431226)
[»] scaffold0161 (1 HSPs)
scaffold0161 (231-397)||(22709-22875)
[»] scaffold0408 (1 HSPs)
scaffold0408 (159-266)||(9979-10086)
[»] chr8 (4 HSPs)
chr8 (159-266)||(14099637-14099744)
chr8 (258-405)||(14101144-14101284)
chr8 (214-425)||(39643477-39643679)
chr8 (222-425)||(39643161-39643355)
[»] chr4 (2 HSPs)
chr4 (237-405)||(27065611-27065778)
chr4 (237-405)||(27086714-27086881)
[»] chr3 (2 HSPs)
chr3 (261-378)||(36323723-36323836)
chr3 (167-218)||(33630479-33630530)
[»] chr2 (1 HSPs)
chr2 (175-258)||(38621648-38621730)
[»] chr5 (2 HSPs)
chr5 (281-425)||(21045794-21045930)
chr5 (178-343)||(3726436-3726597)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 8e-87; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 215 - 425
Target Start/End: Complemental strand, 1774796 - 1774586
Alignment:
Q  215 aatgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttg 314  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  1774796 aatgttagagagtgatattagactgaaatgaataatttagctatttagtttataagtataagaatgttagtttgtctttcctttaagttgttattagttg 1774697  T
Q  315 ggcctttaagttaggtctttagtctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacactatccaaagaaaggaaa 414  Q
    |||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||  |||    
T  1774696 ggcctttaagttaggtatttagtctttaggcccgttagggttactatgcattatcactcctatatatagtgtgtttgacacactattcaaaggaatcaaa 1774597  T
Q  415 tgaatcaaaat 425  Q
    |||||||||||    
T  1774596 tgaatcaaaat 1774586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 178 - 424
Target Start/End: Original strand, 34144411 - 34144649
Alignment:
Q  178 tgaaccttgaggacaaggttcaagtgaacctgtcggtaatgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaaga 277  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||| ||  ||||| |||||||||||||||||| ||| |||||||  ||||| |      
T  34144411 tgaaccttgaggacaaggttcaagtgaacccgtcggtaatgatagagaatgcaattaggctcaaatgaataatttagatatctagtttaagagtaagatt 34144510  T
Q  278 atgttagtttgtctttcctttgagttgttattagttgggcctttaagttaggtctttagtctttaggcccattaaggttattatgcattatcactcctat 377  Q
    || ||||||| ||||||  ||||||||||  |||||||||| |||||||||||||||||||||||||||||||| ||||       | ||||| || |||    
T  34144511 atattagtttatctttcacttgagttgttgctagttgggcc-ttaagttaggtctttagtctttaggcccattagggtt-------actatcattcttat 34144602  T
Q  378 atatagtgtatttgacacactatccaaagaaaggaaatgaatcaaaa 424  Q
    ||||||||| |||||||||| |||||||| || ||||||||||||||    
T  34144603 atatagtgtctttgacacaccatccaaaggaatgaaatgaatcaaaa 34144649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 217 - 405
Target Start/End: Complemental strand, 24977401 - 24977213
Alignment:
Q  217 tgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttggg 316  Q
    ||||||||||||  |||||| |  ||||||||||||||||||||||||||  || ||||  || |||||||||||||| |||||||||||  ||||||||    
T  24977401 tgttagagagtgcaattagatttcaatgaataatttagctatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttggg 24977302  T
Q  317 cctttaagttaggtctttagtctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacactatccaaa 405  Q
    ||||| || |||||||||||||||||||  ||||| ||||||||  |||||||  | ||||||||||||| ||||| ||||||| ||||    
T  24977301 ccttttagctaggtctttagtctttaggttcattagggttattacccattatcctttctatatatagtgtctttgagacactatgcaaa 24977213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 24976973 - 24977099
Alignment:
Q  217 tgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttggg 316  Q
    ||||||||||||  |||||| | ||||||||||||||| |||||||||||  || ||||  || |||||||||||||| |||||||||||  ||||||||    
T  24976973 tgttagagagtgcaattagatttaaatgaataatttagttatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttggg 24977072  T
Q  317 cctttaagttaggtctttagtctttag 343  Q
    ||||| || ||||| ||||||||||||    
T  24977073 ccttttagctaggtttttagtctttag 24977099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 34144329 - 34144405
Alignment:
Q  148 gaccgccaagcaaacctccggacttgtttctgaaccttgaggacaaggttcaagtgaacctgtcggtaatgttagag 224  Q
    ||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  34144329 gaccgacacgcaaacttccgaacttgtttctgaaccttgaggacaaggttcaagtgaacccgtcggcaatgttagag 34144405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 357
Target Start/End: Original strand, 3270607 - 3270745
Alignment:
Q  217 tgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttggg 316  Q
    ||||||| ||||| |||||||| |||| ||| |||||| ||||||| |||  | |||||  || |||||| |||||||  ||||||| || |||||||||    
T  3270607 tgttagatagtgaaattagacttaaataaatgatttagatatttagcttaagattaaaattatattagttggtctttcacttgagttattgttagttggg 3270706  T
Q  317 cctttaagttaggtctttagtctttaggcccattaaggtta 357  Q
    || ||| ||||||||||||||| ||| |||||||| |||||    
T  3270707 cc-ttatgttaggtctttagtc-ttaagcccattagggtta 3270745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 216 - 367
Target Start/End: Original strand, 6889394 - 6889545
Alignment:
Q  216 atgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttgg 315  Q
    |||||||||||||  | ||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  6889394 atgttagagagtgcaactagactcaaataaataatttagctatttagtttataagtaaaattatgttagtttgtctttcctttgagttgttgttagttgg 6889493  T
Q  316 gcctttaagttaggtctttagtctttaggcccattaaggttattatgcatta 367  Q
     |||||||||| ||||||||||||||||| |||||| ||||| ||| |||||    
T  6889494 acctttaagttgggtctttagtctttaggtccattagggttactatccatta 6889545  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 321
Target Start/End: Complemental strand, 9665063 - 9664974
Alignment:
Q  231 attagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttgggccttt 321  Q
    |||||| | |||| ||||||||||||||||| |||| ||||||||  || ||||||||||||| |||||| ||||| |||||||| |||||    
T  9665063 attagattaaaataaataatttagctatttaatttagaagtaaaattatattagtttgtcttt-ctttgatttgtttttagttggaccttt 9664974  T

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Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 217 - 424
Target Start/End: Complemental strand, 3223143 - 3222945
Alignment:
Q  217 tgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttggg 316  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||  |||||||  || |||||||||| ||| |||||||||||  ||||||||    
T  3223143 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtccttcttttgagttgttgctagttggg 3223044  T
Q  317 cctttaagttaggtctttagtctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacactatccaaagaaaggaaatg 416  Q
    || ||||||||||||||||||| ||| |||||||| ||||       |  |||  ||||||||||||||| ||||||||||||||||||  || ||||||    
T  3223043 cc-ttaagttaggtctttagtc-ttaagcccattagggtt-------accatccttcctatatatagtgtctttgacacactatccaaatcaatgaaatg 3222953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 229 - 424
Target Start/End: Complemental strand, 38010863 - 38010667
Alignment:
Q  229 atattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttccttt-gagttgttattagttgggcctttaagtta 327  Q
    ||||||||||||||| ||||||||| ||||||| |||| ||||| ||  || |||||||||||||| ||  |||||||| ||||||||  |||||||||     
T  38010863 atattagactcaaataaataatttacctatttaatttagaagtataattatattagtttgtctttcattgagagttgtttttagttggatctttaagttg 38010764  T
Q  328 ggtctttagtctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacactatccaaagaaaggaaatgaatcaaaa 424  Q
    ||||||||||||||| || ||||| ||||| ||| | |||||| ||||||| ||||||| ||||||| ||||| ||||  ||  |||||||||||||    
T  38010763 ggtctttagtctttaagctcattagggttagtatcctttatcattcctatacatagtgtctttgacatactatgcaaatcaatcaaatgaatcaaaa 38010667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 217 - 424
Target Start/End: Complemental strand, 26542552 - 26542354
Alignment:
Q  217 tgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttggg 316  Q
    ||||| ||||||||||||  |  ||||||||||||||| ||||||||||   |||||||  || |||||||||| |||  || |||||||  ||||||||    
T  26542552 tgttaaagagtgatattacgcctaaatgaataatttagttatttagtttcagagtaaaattatattagtttgtccttcactttagttgttgctagttggg 26542453  T
Q  317 cctttaagttaggtctttagtctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacactatccaaagaaaggaaatg 416  Q
    || |||| |||||||||||||| | | ||| |||||||||| ||||  ||     || |||||||||||| ||||||||||||||||||  || ||||||    
T  26542452 cc-ttaaattaggtctttagtc-tcaagccgattaaggttactatg--tt-----tcttatatatagtgtctttgacacactatccaaatcaatgaaatg 26542362  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 1796903 - 1796954
Alignment:
Q  215 aatgttagagagtgatattagactcaaatgaataatttagctatttagttta 266  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  1796903 aatgttagagagtgatattagactcaaataaatgatttaactatttagttta 1796954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 47431147 - 47431226
Alignment:
Q  281 ttagtttgtctttcctttgagttgttattagttgggcctttaagttaggtctttagtctttaggcccattaaggttatta 360  Q
    ||||||||| |||||||| | |||||  |||||  || ||| |||| ||||||||||||||||| |||||| ||||||||    
T  47431147 ttagtttgtatttccttttaattgtttctagttaagctttttagttgggtctttagtctttaggtccattagggttatta 47431226  T

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Target: scaffold0161 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 231 - 397
Target Start/End: Original strand, 22709 - 22875
Alignment:
Q  231 attagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttgggcctttaagttaggt 330  Q
    |||||||| |||| ||| |||||| |||| |||||||||||||||  || ||||| |||||||||||| | ||||| ||||||   |||||||||||| |    
T  22709 attagacttaaataaatgatttagatattaagtttataagtaaaattattttagtctgtctttcctttaaattgtttttagttaaacctttaagttagtt 22808  T
Q  331 ctttagtctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacac 397  Q
    ||||||||||||| | | ||||| ||||||   ||||||| || |||||||||||| ||||||||||    
T  22809 ctttagtctttagactcgttaagtttattaacaattatcattcttatatatagtgtctttgacacac 22875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 9979 - 10086
Alignment:
Q  159 aaacctccggacttgtttctgaaccttgaggacaaggttcaagtgaacctgtcggtaatgttagagagtgatattagactcaaatgaataatttagctat 258  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||||| |||   ||||||||||||||  | ||||||||||| |||||||||| |||    
T  9979 aaacctccggacttgtttctgaaccttgacgacaaagctcaagtgaacccgtccacaatgttagagagtgcaactagactcaaataaataatttagatat 10078  T
Q  259 ttagttta 266  Q
    ||||||||    
T  10079 ttagttta 10086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 14099637 - 14099744
Alignment:
Q  159 aaacctccggacttgtttctgaaccttgaggacaaggttcaagtgaacctgtcggtaatgttagagagtgatattagactcaaatgaataatttagctat 258  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||||| |||   ||||||||||||||  | ||||||||||| |||||||||| |||    
T  14099637 aaacctccggacttgtttctgaaccttgacgacaaagctcaagtgaacccgtccacaatgttagagagtgcaactagactcaaataaataatttagatat 14099736  T
Q  259 ttagttta 266  Q
    ||||||||    
T  14099737 ttagttta 14099744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 258 - 405
Target Start/End: Original strand, 14101144 - 14101284
Alignment:
Q  258 tttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttgggcctttaagttaggtctttagtctttaggcccattaaggtta 357  Q
    ||||||||| ||||| ||  || ||||||||||||||  |||||||||| |||||||||||||||| |||||| |||||||||||||| ||||| |||||    
T  14101144 tttagtttaaaagtataattatattagtttgtctttcaattgagttgtttttagttgggcctttaaattaggtttttagtctttaggctcattagggtta 14101243  T
Q  358 ttatgcattatcactcctatatatagtgtatttgacacactatccaaa 405  Q
     ||| | ||       ||||||||||||| ||||||||||||||||||    
T  14101244 ctatccttt-------ctatatatagtgtctttgacacactatccaaa 14101284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 214 - 425
Target Start/End: Complemental strand, 39643679 - 39643477
Alignment:
Q  214 taatgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagtt 313  Q
    |||||||||||||||| |||||||| |||| ||| |||||| ||| ||||||| ||||||||  || | ||||| ||||||  || |||||||  |||||    
T  39643679 taatgttagagagtgaaattagacttaaataaatgatttagatatctagtttaaaagtaaaattatatcagtttatctttcacttaagttgttgctagtt 39643580  T
Q  314 gggcctttaagttaggtctttagtctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacactatccaaagaaaggaa 413  Q
    ||||| |||| |||||||||||||| ||| | | |||||||||       | ||||  ||||||||||||||| |||||||||||||||||| |||  ||    
T  39643579 gggcc-ttaaattaggtctttagtc-ttaagtctattaaggtt-------actatctttcctatatatagtgtctttgacacactatccaaataaattaa 39643489  T
Q  414 atgaatcaaaat 425  Q
    ||||||||||||    
T  39643488 atgaatcaaaat 39643477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 425
Target Start/End: Original strand, 39643161 - 39643355
Alignment:
Q  222 gagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttgggccttt 321  Q
    |||||||| |||||| | |||| ||| |||||| ||| | |||||  | |||||  || ||| ||||||||||  || |||||||  ||||||||||||     
T  39643161 gagagtgaaattagatttaaataaatgatttagatatcttgtttaagactaaaattatattattttgtctttcactttagttgttgctagttgggcctt- 39643259  T
Q  322 aagttaggtctttagtctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacactatccaaagaaaggaaatgaatca 421  Q
    ||||||||||||||||||| || ||||||| ||||| ||| | |       ||||||| |||||| |||||||||||||||||| |||  ||||||||||    
T  39643260 aagttaggtctttagtcttaag-cccattagggttactatcctt-------cctatatttagtgtttttgacacactatccaaataaatcaaatgaatca 39643351  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 405
Target Start/End: Original strand, 27065611 - 27065778
Alignment:
Q  237 ctcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttgggcctttaagttaggtctttag 336  Q
    ||||||| |||||||||| |||||| |||||||||||||  || ||||||| |||||  |||||||||||  ||||||||||||||| ||  || |||||    
T  27065611 ctcaaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgggcctttaa-ttgagtttttag 27065709  T
Q  337 tctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacactatccaaa 405  Q
    ||||||||| |||||  ||| ||||  |  |||| | ||||||||||||| ||||||||||||| ||||    
T  27065710 tctttaggctcattagagtttttatctaccatcatttctatatatagtgtctttgacacactatgcaaa 27065778  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 405
Target Start/End: Original strand, 27086714 - 27086881
Alignment:
Q  237 ctcaaatgaataatttagctatttagtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttgggcctttaagttaggtctttag 336  Q
    ||||||| |||||||||| |||||| |||||||||||||  || ||||||| |||||  |||||||||||  ||||||||||||||| ||  || |||||    
T  27086714 ctcaaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgggcctttaa-ttgagtttttag 27086812  T
Q  337 tctttaggcccattaaggttattatgcattatcactcctatatatagtgtatttgacacactatccaaa 405  Q
    ||||||||| |||||  ||| ||||  |  |||| | ||||||||||||| ||||||||||||| ||||    
T  27086813 tctttaggctcattagagtttttatctaccatcatttctatatatagtgtctttgacacactatgcaaa 27086881  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 378
Target Start/End: Complemental strand, 36323836 - 36323723
Alignment:
Q  261 agtttataagtaaaagaatgttagtttgtctttcctttgagttgttattagttgggcctttaagttaggtctttagtctttaggcccattaaggttatta 360  Q
    |||||||||||||||  || ||| ||||||||||||||||||||||  |||||| ||| || ||||||||||||||||||   ||||||||||||| |||    
T  36323836 agtttataagtaaaattatattaatttgtctttcctttgagttgttgctagttgagcc-ttgagttaggtctttagtctt---gcccattaaggttgtta 36323741  T
Q  361 tgcattatcactcctata 378  Q
    | |||||||  |||||||    
T  36323740 tccattatccttcctata 36323723  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 33630479 - 33630530
Alignment:
Q  167 ggacttgtttctgaaccttgaggacaaggttcaagtgaacctgtcggtaatg 218  Q
    |||||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  33630479 ggacttgtctctgaaccttgaggacaagattcaagtgaacttgtcggtaatg 33630530  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 38621730 - 38621648
Alignment:
Q  175 ttctgaaccttgaggacaaggttcaagtgaacctgtcggtaatgttagagagtgatattagactcaaatgaataatttagctat 258  Q
    ||||||||||||| |||||||||||||||||| |||||  ||||||||||||||  | ||||||||||| ||||||||||||||    
T  38621730 ttctgaaccttgaagacaaggttcaagtgaac-tgtcgacaatgttagagagtgcaactagactcaaataaataatttagctat 38621648  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 425
Target Start/End: Original strand, 21045794 - 21045930
Alignment:
Q  281 ttagtttgtctttcctttgagttgttattagttgggcctttaagttaggtctttagtctttaggcccattaaggttattatgcattatcactcctatata 380  Q
    ||||||||||||||  ||||||||||  | ||||| |||| ||||||||||| |||||||||||||||||| ||||       |  |||| |||||||||    
T  21045794 ttagtttgtctttcgcttgagttgttgctcgttggacctt-aagttaggtctgtagtctttaggcccattagggtt-------acgatcattcctatata 21045885  T
Q  381 tagtgtatttgacacactatccaaagaaaggaaatgaatcaaaat 425  Q
    |||||| ||||||||||||||||||  ||  ||||||||||||||    
T  21045886 tagtgtttttgacacactatccaaatcaataaaatgaatcaaaat 21045930  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 3726597 - 3726436
Alignment:
Q  178 tgaaccttgaggacaaggttcaagtgaacctgtcggtaatgttagagagtgatattagactcaaatgaataatttagctatttagtttataagtaaaaga 277  Q
    |||||| |||||| |||||||||||||| | || || ||||||| ||||||  | ||||||||||| |||||||||| |||||| || | ||||| ||      
T  3726597 tgaaccatgaggataaggttcaagtgaatcggttggcaatgttaaagagtgtaactagactcaaataaataatttagttatttatttgagaagtataatt 3726498  T
Q  278 atgttagtttgtctttcctttgagttgttattagttgggcctttaagttaggtctttagtctttag 343  Q
    || ||||||||    || ||| | |||||  |||||||  |||||| |||||||||||||||||||    
T  3726497 atattagtttg----tcattttaattgtttctagttggatctttaaattaggtctttagtctttag 3726436  T

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