View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1937-Insertion-9 (Length: 905)
Name: NF1937-Insertion-9
Description: NF1937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1937-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 667; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 8 - 723
Target Start/End: Original strand, 39540982 - 39541704
Alignment:
| Q |
8 |
gaaattgcatactgcattttgaatatagtaaatgaaatgccatacttggtctccaaccacaaatccaaagaaaagcttcttctaaagtacttaaccatgg |
107 |
Q |
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| T |
39540982 |
gaaattgcatactgcattttgaatatagtaaatgaaatgccatacttggtctccaaccaccaatccaaagaaaagcttcttctaaagtacttaaccatgg |
39541081 |
T |
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| Q |
108 |
tggtgaaaacatggacaaaacatctttctttgcaaaacttgactttgttttatagtaacattcataatgctcaacaaccttatcaatcagtgtatgcatt |
207 |
Q |
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| T |
39541082 |
tggtgaaaacatggacaaaacatctttctttgcaaaacttgactttgttttatagtaacactcataatgctcaacaaccttatcaatcagtgtatgcatt |
39541181 |
T |
|
| Q |
208 |
ctgtcatttgtgagctgaggttgagctgatttagctgctacaagctcattcagatatttgttttgctcaaccatccaacactcaaaaaatttgttgaagc |
307 |
Q |
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| T |
39541182 |
ctgtcatttgtgagctgaggttgagctgatttagctgctacaagctcattcagatatttgttttgctcaaccatccaacactcaaaaaatttgttgaagc |
39541281 |
T |
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| Q |
308 |
tttcagcatcattgccattacttggaagcaaagacatca-ttttggtgttgtagaatattgctcaatgttgctagaagcaacgtctctatgcttttatag |
406 |
Q |
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| T |
39541282 |
tttcagcatcattgccattacttggaagcaaagacatcatttttggtgttgtagaatattgctcaatgttgctaaaagcaacgtctctatgcttttatag |
39541381 |
T |
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| Q |
407 |
gcaagtgaggtgctacaaatttatagcggttttcagtttaaggttttgtgccgttggttt-tat-----tacattttttatttgattactaatatatggt |
500 |
Q |
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| T |
39541382 |
gcaagtgaggtgctacacatttatagcggttttcagtttaaggttttgtgccgttggtttatattactatacattttttatttgattactaatatatggt |
39541481 |
T |
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| Q |
501 |
tgttaatgaagagatttggatgtgtgtgcgtgagtgaagacaacttgctcaaattgtttacaagtggggtatgatataatcatagtaagttgagatatgg |
600 |
Q |
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| T |
39541482 |
tgttaatgaagaggtttggatgtgtgtgcgtgagtgaagacaacttgctcaaattgtttacaagtggggtatgatataatcatagtaagttgagatatgg |
39541581 |
T |
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| Q |
601 |
tgaacttgaaaaaatgaatggcagaactaactagaaagctgtctagtgcaggggatcatgtgccagtgccactaaccttgtttccccaaagtattgataa |
700 |
Q |
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| T |
39541582 |
tgaacttgaaaaaatgaatggcagaactaactagaaagctgtctagtgcaggggatcatgtgccagtgccactaaccttgtttccccaaagtattgataa |
39541681 |
T |
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| Q |
701 |
caaacaagagcaagttgtattat |
723 |
Q |
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| T |
39541682 |
caaacaagagcaagttgtattat |
39541704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 720 - 905
Target Start/End: Original strand, 39542074 - 39542260
Alignment:
| Q |
720 |
ttattcgatcttaactcaaatttcataacaatcacttgatctcaaaaggtgagctagatactatgtatcactgatacttttaatctaagacgtgttcggt |
819 |
Q |
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| T |
39542074 |
ttattcgatcttaactcaaatttcataacaatcacttgatctcaaaaggtgagctagatactatgtatcactgatacttttaatctaagacgtgttcggt |
39542173 |
T |
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| Q |
820 |
gttcgacatgtatcagtgtatgacaacgacgtgacagcaacacatgtaattacaattatgtcgttttt-aaagttattaacggtgtc |
905 |
Q |
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| T |
39542174 |
gttcgacatgtatcagtgtacgacaacgacatgacggcaacacatgtaattacaattatgtcgtttttaaaagttattaacggtgtc |
39542260 |
T |
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