View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19370_low_1 (Length: 579)
Name: NF19370_low_1
Description: NF19370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19370_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Complemental strand, 54879423 - 54878867
Alignment:
| Q |
18 |
ctaatgatcccacaagccaccgtgtcaaacttttaatctttattgctgatgcattaaaaataattcttttatagattgatgacatataaacgtgtttgtt |
117 |
Q |
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| T |
54879423 |
ctaatgatcccacaagccaccgtgtcaaacttttaatctttattgctgatgcattaaaaataattcttttatagattgatgacatataaacgtgtttgtt |
54879324 |
T |
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| Q |
118 |
gcattgcacttagttggtgagatgtaattgggtactagtgaggtacgtatacattaac-aatatttatagctcaaattggaaagtgcaagaatggaaaag |
216 |
Q |
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| T |
54879323 |
gcattgcacttagttggtcagatgtaattgggtactagtgaggtacgtatacattaacaaatatttatagctcaaattggaaagtgcaagaatggaaaag |
54879224 |
T |
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| Q |
217 |
tgattaaattaagaagtcggcttaactagacgacaaacaacacnnnnnnnnggggactagatcgatatatatggatgatgataatgatgatgatctcgtt |
316 |
Q |
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| T |
54879223 |
tgattaaattaagaagtcggcttaactagacgacaaacaacacttttttttggggactagatcgatatatatggatgatg---atgatgatgatctcgtt |
54879127 |
T |
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| Q |
317 |
tttaaatctttgaacaaaatattgtataagatatgcaagttgtcggcatatcaaaatggtagagactagaagataagaaaagaacattgcacttttcatc |
416 |
Q |
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| T |
54879126 |
tttaaatctttgaacaaaatattgtataagatatgcaagttgtcggcatatcaaaatggtagagactagaagataagaaaagaacattgcacttttcatc |
54879027 |
T |
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| Q |
417 |
----------taaatcttattatagttccaatatatattcttcctcacgtggattgcataccgttttnnnnnnnnnnnnnggagggtcttaccaaaatta |
506 |
Q |
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| T |
54879026 |
attgtgtatttaaatcttattatagttccaatatatattcttcctcacatggattgcatactgtttt--tatatatatatggagggtcttaccaaaatta |
54878929 |
T |
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| Q |
507 |
attttaaaagcatgtgaggctgggattgaggactcaaattttgtgtatcatctcaatatatt |
568 |
Q |
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| T |
54878928 |
attttaaaagcatgtgaggctgggattgaggactcaaattttgtgtatcatctcaatatatt |
54878867 |
T |
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