View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19370_low_2 (Length: 402)
Name: NF19370_low_2
Description: NF19370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19370_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Complemental strand, 29280857 - 29280477
Alignment:
| Q |
15 |
acagtaacaattgtggctgcctcatgtcatgatcattgatattgcagaaaatcgcggtcaaatgtggttcaagtgatgcagtctcaatcacagttatgct |
114 |
Q |
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| T |
29280857 |
acagtaacaattgtggttgcctcatgtcatgatcattgatattgcagaaaatcgcggtcaaatgtggttcatgtgatgcggtctcaatcacagttatgct |
29280758 |
T |
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| Q |
115 |
tcggtttcaaagacatgattaaccattgtgtctcggcctagattacagtcgcagatggacctatatttaaaatccttggaccatatagctatacaattcg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29280757 |
tcggtttcaaagacatgattaaccattgtgtctcggcctagattacagtcgcagatggacctatatttaaaatccttggaccatatagctatacaatccg |
29280658 |
T |
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| Q |
215 |
gattagtgaaatgcatacgttggattgaacgaacaattaagcacataatcatagtctaatataatgttatnnnnnnntcacctgcttcagaaacccagcc |
314 |
Q |
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| T |
29280657 |
gattagtgaaatgcatacgttggattgaacgaacaattaagcacataatcatagtctaatataatgttataaaaaaatcacctgcttcagaaacccagcc |
29280558 |
T |
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| Q |
315 |
ccaaaagcccttgttacattcaagtaacctttcactctgcctttacttattgcagaagggtcatctgcatgctcctctctg |
395 |
Q |
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| T |
29280557 |
ccaaaagcccttgttacattcaagtaacctttcactctgcctttacttattgcagaagggtcatctgcatgctcctttctg |
29280477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 395
Target Start/End: Original strand, 21969437 - 21969535
Alignment:
| Q |
297 |
tgcttcagaaacccagccccaaaagcccttgttacattcaagtaacctttcactctgcctttacttattgcagaagggtcatctgcatgctcctctctg |
395 |
Q |
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| T |
21969437 |
tgcttaaggaaccctgctccaaaagcccttgtgacatttaagtaacctttcactcgtcctttcgttattgcagatggatcatccggatgctcctgtctg |
21969535 |
T |
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