View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19370_low_3 (Length: 368)
Name: NF19370_low_3
Description: NF19370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19370_low_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 29791900 - 29791552
Alignment:
| Q |
20 |
tcagtgcctatgtcaagggtgacagtgacataacttctggatctctgtttaacgaagtagaaaatgctaccagatatagtctgcttgattctcaagagct |
119 |
Q |
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| T |
29791900 |
tcagtgcctatgtcaagggtgacaatgacataacttctggatctctgtttaacgaagtagaaaatgctaccagatatagtctgcttgattctcaagagct |
29791801 |
T |
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| Q |
120 |
agattttcaatgtaaagaactccatcagatgcctaagaggaaacttcttgaacttgaatctggctcatacttcaatgatcagatggtgtctcctatgttt |
219 |
Q |
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| T |
29791800 |
agattttcaatgtaaagaactccatcagatgcctaagaggaaacttcttgaacttgaatctggctcatacttcaatgatcagatggtgtctcctatgttt |
29791701 |
T |
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| Q |
220 |
cccgaatcgggagagagacttactccagatgccgagtttccaacctatcattctcagaactttcaacctcagtacagtataacagcacccaactgcaaac |
319 |
Q |
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| T |
29791700 |
cccgaattgggagagagacttactccacatgccgagtttccaacctatcattctcagaactttcaacctcagtacagtataacagcacccaactgcaaac |
29791601 |
T |
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| Q |
320 |
tgagtggaactccaagtttcaggacctccgtcaagggtgacgtaactca |
368 |
Q |
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| T |
29791600 |
tgagtggaactccaagtttcaggacctccggtaagggtgacgtaactca |
29791552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 155 - 360
Target Start/End: Complemental strand, 29792083 - 29791878
Alignment:
| Q |
155 |
agaggaaacttcttgaacttgaatctggctcatacttcaatgatcagatggtgtctcctatgtttcccgaatcgggagagagacttactccagatgccga |
254 |
Q |
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| T |
29792083 |
agaggaaacttctggaacttgaatcaagctcatactgcaatgatcagatgttgtctcctatgtttctcgaatcaggtgagaaaattgctccacatgctga |
29791984 |
T |
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| Q |
255 |
gtttccaacctatcattctcagaactttcaacctcagtacagtataacagcacccaactgcaaactgagtggaactccaagtttcaggacctccgtcaag |
354 |
Q |
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| T |
29791983 |
gtttccaacctatcattatcagaaatttcaacctcggtacagcataacagcgcctgagtgcaaactaagtggaactccaagtttcagtgcctatgtcaag |
29791884 |
T |
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| Q |
355 |
ggtgac |
360 |
Q |
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| T |
29791883 |
ggtgac |
29791878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 29791531 - 29791432
Alignment:
| Q |
119 |
tagattttcaatgtaaagaactccatcagatgcctaagaggaaacttcttgaacttgaatctggctcatacttcaatgatcagatggtgtctcctatgtt |
218 |
Q |
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| T |
29791531 |
tagattttcaatgtactgaaatccaacagatacctaagaggaaactccttgaacttgaaccaagctcatccttcagtgatcatttgttgcctcctatgtt |
29791432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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