View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_high_23 (Length: 230)
Name: NF19371_high_23
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 54984895 - 54984694
Alignment:
| Q |
11 |
aagcaaaggataaggaaaagcattcaaaaccttcttgttgtaaatattgaaaaccacattcaaagcccaccatgttgcaaaatacaaaccaattttgagt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54984895 |
aagccaaggataaggaaaagcattcaaaaccttcttgttgtaaatattgaaaaccacattcaaagcccaccatgttgcaaaatacaaaccaattttgagt |
54984796 |
T |
|
| Q |
111 |
ttttgagctgcttgttctcctggtatgtcaatattaatctccaagggctgtgacctatctgcttcataggcatgacactcagtttccctccttgtgagtt |
210 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54984795 |
ttttgagctgcttgttctcctgctatgtcaatattaatctccaagggctgtgacctatctgcttcataggcatgacactcagtttccctccttgtgagtt |
54984696 |
T |
|
| Q |
211 |
tg |
212 |
Q |
| |
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|| |
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| T |
54984695 |
tg |
54984694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 7882790 - 7882678
Alignment:
| Q |
11 |
aagcaaaggataaggaaaagcattcaaaaccttcttgttgtaaatattgaaaaccacattcaaagcccaccatgttgcaaaatacaaaccaattttgagt |
110 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||| ||||| || || |
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| T |
7882790 |
aagccaagggtaaggaaaagcattcaaaactttcttgttgtatatgttgaaaacaacattcaaagcccaccaagtagcaaaatacaatccaatcttaagc |
7882691 |
T |
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| Q |
111 |
ttttgagctgctt |
123 |
Q |
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||||||||||||| |
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| T |
7882690 |
ttttgagctgctt |
7882678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 18395196 - 18395113
Alignment:
| Q |
11 |
aagcaaaggataaggaaaagcattcaaaaccttcttgttgtaaatattgaaaaccacattcaaagcccaccatgttgcaaaata |
94 |
Q |
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|||| |||| ||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| |
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| T |
18395196 |
aagccaagggtaagggtaagcattcaaaaccttcttgttgtaaatattaaacacaacattcaaagcccaccaagttgcaaaata |
18395113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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