View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19371_high_8 (Length: 386)

Name: NF19371_high_8
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19371_high_8
NF19371_high_8
[»] chr7 (6 HSPs)
chr7 (10-370)||(6439651-6440014)
chr7 (42-256)||(32716435-32716646)
chr7 (10-252)||(37338658-37338892)
chr7 (151-237)||(27616373-27616459)
chr7 (156-255)||(22290892-22290991)
chr7 (151-255)||(27993932-27994039)
[»] chr2 (9 HSPs)
chr2 (80-255)||(4748039-4748212)
chr2 (109-255)||(44649956-44650100)
chr2 (10-255)||(26576091-26576332)
chr2 (72-240)||(34409532-34409699)
chr2 (73-130)||(13039030-13039089)
chr2 (75-150)||(9929780-9929857)
chr2 (178-255)||(13037338-13037415)
chr2 (170-255)||(32200870-32200955)
chr2 (179-255)||(9929661-9929737)
[»] chr8 (9 HSPs)
chr8 (150-255)||(1226086-1226190)
chr8 (61-226)||(15131908-15132071)
chr8 (119-255)||(27401853-27401985)
chr8 (166-252)||(15850499-15850585)
chr8 (116-255)||(18393548-18393683)
chr8 (153-255)||(2889764-2889866)
chr8 (153-255)||(3145269-3145371)
chr8 (153-255)||(2875409-2875511)
chr8 (153-255)||(3159861-3159963)
[»] chr1 (8 HSPs)
chr1 (109-253)||(48632572-48632713)
chr1 (151-255)||(3954980-3955084)
chr1 (115-255)||(3387685-3387821)
chr1 (40-255)||(7021489-7021704)
chr1 (151-255)||(9149026-9149130)
chr1 (155-202)||(18476590-18476637)
chr1 (67-150)||(32740978-32741063)
chr1 (115-151)||(16426562-16426598)
[»] scaffold0325 (1 HSPs)
scaffold0325 (106-255)||(12908-13054)
[»] chr5 (1 HSPs)
chr5 (151-255)||(32676664-32676767)
[»] chr4 (7 HSPs)
chr4 (10-202)||(45612330-45612519)
chr4 (109-252)||(2641173-2641313)
chr4 (17-202)||(17732857-17733038)
chr4 (67-255)||(40289098-40289284)
chr4 (72-255)||(44507718-44507899)
chr4 (150-241)||(24614580-24614672)
chr4 (150-202)||(24600933-24600985)
[»] chr6 (4 HSPs)
chr6 (67-217)||(12843971-12844119)
chr6 (67-217)||(17540085-17540233)
chr6 (67-199)||(57082-57213)
chr6 (151-255)||(33234884-33234985)
[»] chr3 (4 HSPs)
chr3 (112-253)||(27063772-27063910)
chr3 (158-252)||(43921978-43922072)
chr3 (150-255)||(17715871-17715977)
chr3 (150-255)||(19017100-19017206)
[»] scaffold0012 (1 HSPs)
scaffold0012 (115-255)||(209219-209355)
[»] scaffold0019 (1 HSPs)
scaffold0019 (193-255)||(70143-70205)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 370
Target Start/End: Complemental strand, 6440014 - 6439651
Alignment:
Q  10 ataatactcatacgagacgtgttggataactcagacaaatgtttgaaacatattttgttttactctcttacttccgcacaccatagatgcatgagttaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6440014 ataatactcatacgagacgtgttggataactcagacaaatgtttgaaacatattttgttttactctcttacttccgcacaccatagatgcatgagttaca 6439915  T
Q  110 tgtgttgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6439914 tgtgttgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatgtca 6439815  T
Q  210 aatactatcgtatcttgtgttataacttttttcaatgaaataaattaacnnnnnnnaataattaaactgttagatttgtgttgtatcgttgctaaattac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| |||||    
T  6439814 aatactatcgtatcttgtgttataacttttttcaatgaaataaattaactttttttaataattaaactgttagatttgtgttgtatcgttgctacattac 6439715  T
Q  310 tcatctctttcgat--cacaagg-ttttttctttcaaattcgcaaaattgaatatgatttatca 370  Q
    ||||||||||| ||  ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  6439714 tcatctctttcaatcacacaaggtttttttctttcaaattcacaaaattgaatatgatttatca 6439651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 256
Target Start/End: Original strand, 32716435 - 32716646
Alignment:
Q  42 agacaaatgtttgaaacatattttgttttactctcttacttccgcacaccatagatgcatgagttac--atgtgttgagaaatgttgatcattgaggagt 139  Q
    ||||||||||||||||||||| || | ||  |||||||||||| |||| |||| || || |||||||  || | ||||||||| ||||| | |||||  |    
T  32716435 agacaaatgtttgaaacatatattttgtttatctcttacttccacacatcataaatacaagagttacatatatattgagaaattttgat-aatgagggat 32716533  T
Q  140 tatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataactttt 239  Q
    |||||||    |||||| |||||| || |||||||| ||||||||||||| | |||||||||| | |||||||||||| ||||||||| ||| |||||||    
T  32716534 tatagac----attaaaattgattgcaccatttttaactttttcgatagtggatgaataaataaagatcaaatactattgtatcttgttttagaactttt 32716629  T
Q  240 ttcaatgaaataaatta 256  Q
    || ||| ||| ||||||    
T  32716630 tttaataaaacaaatta 32716646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 37338658 - 37338892
Alignment:
Q  10 ataatactcatacgagacgtgttggataactcagacaaatgtttgaaacatattttgttttactctcttacttccgcacaccatagatgcatgagttaca 109  Q
    |||||||||||||||| ||||   || ||||||||||||| | |||||||| ||||      ||||||| ||||| || ||| ||||| || ||||||||    
T  37338658 ataatactcatacgagtcgtgacagacaactcagacaaatatctgaaacatttttt------ctctcttgcttccacataccgtagatacaagagttaca 37338751  T
Q  110 tgtg--ttgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatat 207  Q
    | ||  ||||||||||||||||| | |||  || || ||||||    |||||||| | |||||||||| |||||| |||||||| |||||||||| |  |    
T  37338752 tatgctttgagaaatgttgatcaattagggattttaaacatta----aagttgataataacatttttaacttttttgatagtagatgaataaataaaggt 37338847  T
Q  208 caaatactatcgtatcttgtgttataacttttttcaatgaaataa 252  Q
    ||||||||||  |||||||| | ||||| ||||  ||||||||||    
T  37338848 caaatactatgatatcttgtttgataacattttctaatgaaataa 37338892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 27616459 - 27616373
Alignment:
Q  151 attaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataactt 237  Q
    |||||||||||||| |||||||||| |||||  |||||||| || ||||||| |  |||||||||||  |||||||| ||| |||||    
T  27616459 attaaagttgattataacatttttagcttttctgatagtagatgtataaataaaagtcaaatactatgatatcttgttttagaactt 27616373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 22290991 - 22290892
Alignment:
Q  156 agttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    ||||||||| |  ||||||| |||||| |||||||| | |||||||| |  |||||||| ||  ||||||||  || ||||||||| |||||||||||||    
T  22290991 agttgattatataatttttagcttttttgatagtagattaataaataaaggtcaaatacaatgatatcttgttgtagaactttttttaatgaaataaatt 22290892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 27994039 - 27993932
Alignment:
Q  151 attaaagttgattacaa---catttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatga 247  Q
    ||||||||| |||||||   ||||||||  ||||||||| |||| || ||||||| | ||||| | |||| |||||||||  || |||||| || |||||    
T  27994039 attaaagtttattacaaatgcatttttaaatttttcgatggtagatggataaataaagatcaattgctattgtatcttgttatagaactttatttaatga 27993940  T
Q  248 aataaatt 255  Q
    ||||||||    
T  27993939 aataaatt 27993932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 255
Target Start/End: Original strand, 4748039 - 4748212
Alignment:
Q  80 cttccgcacaccatagatgcatgagttacatgtgttgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctt 179  Q
    ||||| |||||| ||||| || ||||||||||||||| ||||||||||||| ||||| |||||||| |   |||||||||||||||| ||||||||  ||    
T  4748039 cttccacacaccgtagatccaagagttacatgtgttgtgaaatgttgatcactgaggggttatagagac--attaaagttgattacagcatttttagttt 4748136  T
Q  180 tttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
     ||| |||| || |||||||||| |  ||||||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  4748137 gttcaatagaagatgaataaataaaggtcaaatactatcgtaacttgttttagaactttttccaatgaaataaatt 4748212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 255
Target Start/End: Original strand, 44649956 - 44650100
Alignment:
Q  109 atgtgttgagaaatgttgatcattgaggag-ttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatat 207  Q
    ||||||||| |||||||||||| | ||| | |||||||    |||||||||||||||||||||||||| |||||| |||||||| |||||||||| |  |    
T  44649956 atgtgttgaaaaatgttgatcaattaggggcttataga----aattaaagttgattacaacatttttaacttttttgatagtagatgaataaataaaggt 44650051  T
Q  208 caaatactatcgtatcttgtgttataa-cttttttcaatgaaataaatt 255  Q
    ||||| |||| ||||||||| ||||||  ||||||||||||||||||||    
T  44650052 caaattctatggtatcttgttttataattttttttcaatgaaataaatt 44650100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 26576332 - 26576091
Alignment:
Q  10 ataatactcatacgagacgtgttggataactcagacaaatgtttgaaacatattttgttttactctcttacttccgcacaccatagatgcatgagttac- 108  Q
    |||| ||||||||||| ||||| ||| |||||| |||||| ||| ||||| ||||| | |  ||||||| |||||||||||||||||| || |||||||     
T  26576332 ataacactcatacgagccgtgtcggacaactcaaacaaatatttaaaacaaattttttct--ctctcttgcttccgcacaccatagatacaagagttaca 26576235  T
Q  109 -atgtgttgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatat 207  Q
     |||| ||||||||||||||||  | ||  |||||||||    |||| ||||||||| | | |||||| ||| || |||||||| |||||||||| |  |    
T  26576234 tatgttttgagaaatgttgatcgattagtggttatagac----attatagttgattatatcgtttttagcttatttgatagtagatgaataaataaaggt 26576139  T
Q  208 caaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    ||||||||||  ||||||||  || ||||||||  ||||| |||||||    
T  26576138 caaatactatgatatcttgttgtagaactttttctaatgacataaatt 26576091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 34409532 - 34409699
Alignment:
Q  72 ctctcttacttccgcacaccatagatgcatgagttacatgtgtt--gagaaatgttgatcattgaggagttatagacattaattaaagttgattacaaca 169  Q
    |||||||  ||||||||||||||||| || ||||||||| ||||  ||||||||||||||| | ||| |||||||||    |||| ||||||||| | ||    
T  34409532 ctctcttgattccgcacaccatagatacaagagttacatatgttttgagaaatgttgatcaattaggggttatagac----attatagttgattatatca 34409627  T
Q  170 tttttatctttttc-gatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttt 240  Q
    |||||| ||||||| ||  |||| | |||||||| |  |||||||||||  ||||||||  || ||||||||    
T  34409628 tttttagctttttctgacggtagataaataaataaaggtcaaatactataatatcttgttgtagaacttttt 34409699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 13039089 - 13039030
Alignment:
Q  73 tctcttacttccgcacaccatagatgcatgagttacatgtgt--tgagaaatgttgatca 130  Q
    |||||| |||||||||||||||||| || ||||||||| |||  ||||||||||||||||    
T  13039089 tctcttgcttccgcacaccatagatacaagagttacatatgttatgagaaatgttgatca 13039030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 9929857 - 9929780
Alignment:
Q  75 tcttacttccgcacaccatagatgcatgagttacatgtgtt--gagaaatgttgatcattgaggagttatagacatta 150  Q
    |||| ||||| |||||||||||| || ||||||||| ||||  |||||||||||||||   ||| |||||||||||||    
T  9929857 tcttgcttccacacaccatagatacaagagttacatatgttttgagaaatgttgatcaaataggggttatagacatta 9929780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 13037415 - 13037338
Alignment:
Q  178 tttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    ||||| |||||||| |||||||||| | ||||||||||||  ||||||||  || ||||||||  ||||| |||||||    
T  13037415 ttttttgatagtagatgaataaataaagatcaaatactatgatatcttgttgtagaactttttcaaatgacataaatt 13037338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 32200870 - 32200955
Alignment:
Q  170 tttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    |||||| |||||| |||||||| |||||||||| |  |||||||||||  ||||||||  || ||||||||  ||||| |||||||    
T  32200870 tttttagcttttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatgacataaatt 32200955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 9929737 - 9929661
Alignment:
Q  179 ttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    |||| |||||||| |||||||||| |  |||||||||||  ||||||||  || ||||||||  |||||||||||||    
T  9929737 tttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatgaaataaatt 9929661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 1226190 - 1226086
Alignment:
Q  150 aattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaa 249  Q
    ||||||||||||||||||||||||||  ||||| |||||||| |||||||||| | |||||||||| | ||||||||| |||||||||||||||||||||    
T  1226190 aattaaagttgattacaacatttttaaattttt-gatagtagatgaataaataaagatcaaatactctggtatcttgttttataacttttttcaatgaaa 1226092  T
Q  250 taaatt 255  Q
    ||||||    
T  1226091 taaatt 1226086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 15131908 - 15132071
Alignment:
Q  61 attttgttttactctcttacttccgcacaccatagatgcatgagttacatgtgttg--agaaatgttgatcattgaggagttatagacattaattaaagt 158  Q
    ||||| |||| ||||||| |||| |||||||| |||| || ||||||||| ||||   |||||| ||||||| | ||| |||||||||||||     |||    
T  15131908 attttttttttctctcttgcttctgcacaccagagatacaggagttacatatgtttttagaaatattgatcaattaggggttatagacattat----agt 15132003  T
Q  159 tgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttg 226  Q
    |||||| | |||||||| ||||||||||||||| | |||||||| | ||||||||||||  |||||||    
T  15132004 tgattatatcatttttagctttttcgatagtagataaataaataaagatcaaatactatgatatcttg 15132071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 255
Target Start/End: Complemental strand, 27401985 - 27401853
Alignment:
Q  119 aaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatc 218  Q
    ||||||||||||  |||| ||||||||||||||    ||||||||||||| ||||| | | |||| ||||||| || ||||||| |   ||||| ||||     
T  27401985 aaatgttgatcaacgaggggttatagacattaa----agttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattctatt 27401890  T
Q  219 gtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    |||||||||  |||||||||||| |||||||||||||    
T  27401889 gtatcttgttatataactttttttaatgaaataaatt 27401853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 15850499 - 15850585
Alignment:
Q  166 aacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataa 252  Q
    |||||||||| |||||| |||||||| |||||||||| || ||||||||| |  |||||||| ||||||||||||  ||||||||||    
T  15850499 aacatttttagcttttttgatagtagatgaataaataaatgtcaaatactgtgatatcttgttttataactttttctaatgaaataa 15850585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 255
Target Start/End: Original strand, 18393548 - 18393683
Alignment:
Q  116 gagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatact 215  Q
    ||||||||||||||| | | | |||||||||||||    |||||||||||||| ||||||  ||||| |||||||| || ||||||| |  |||||||||    
T  18393548 gagaaatgttgatcaatcaagggttatagacatta----aagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatact 18393643  T
Q  216 atcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    ||  ||||||||  || ||||||||| ||| |||||||||    
T  18393644 attttatcttgttataaaactttttttaataaaataaatt 18393683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 2889764 - 2889866
Alignment:
Q  153 taaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataa 252  Q
    ||||||||| |||||| ||||||  |||||||||||||| || ||||||| |   |||||||||| |||||||||  || | ||||||| ||||||||||    
T  2889764 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttatagacctttttttaatgaaataa 2889863  T
Q  253 att 255  Q
    |||    
T  2889864 att 2889866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 3145371 - 3145269
Alignment:
Q  153 taaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataa 252  Q
    ||||||||| |||||| ||||||  |||||||||||||| || ||||||| |   |||||||||| |||||||||  || | ||||||| ||||||||||    
T  3145371 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttatagacctttttttaatgaaataa 3145272  T
Q  253 att 255  Q
    |||    
T  3145271 att 3145269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 2875409 - 2875511
Alignment:
Q  153 taaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataa 252  Q
    |||||||||||||||| | ||||  |||||| ||||||| || ||||||| |   |||||||||| |||||||||  || | ||||||| |||||| |||    
T  2875409 taaagttgattacaacgtgtttaaatttttcaatagtagatggataaataaaggccaaatactattgtatcttgttataaacctttttttaatgaactaa 2875508  T
Q  253 att 255  Q
    |||    
T  2875509 att 2875511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 3159963 - 3159861
Alignment:
Q  153 taaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataa 252  Q
    |||||||||||||||| | ||||  |||||||||| ||| || ||||||| |   |||||||||| ||| |||||  || | ||||||| ||||||||||    
T  3159963 taaagttgattacaacgtgtttaaatttttcgatattagatggataaataaaggccaaatactattgtaacttgttatagacctttttttaatgaaataa 3159864  T
Q  253 att 255  Q
    |||    
T  3159863 att 3159861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 253
Target Start/End: Original strand, 48632572 - 48632713
Alignment:
Q  109 atgtgttgagaaatgttgatc-attgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatat 207  Q
    ||||||||||||||||||||| |||  || ||||||||    ||||||||||||||||||| |||||| |||||| ||||||||  ||||||||| |  |    
T  48632572 atgtgttgagaaatgttgatcaattacggggttataga----aattaaagttgattacaacgtttttagcttttttgatagtagaagaataaataaaggt 48632667  T
Q  208 caaatactatcgtatcttgtgttataacttttttcaatgaaataaa 253  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||    
T  48632668 caaatactatggtatcttgttttagaacttttttcaatgaaataaa 48632713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 3955084 - 3954980
Alignment:
Q  151 attaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaat 250  Q
    |||||||||||||||||| |||||| ||||||||||||||| || ||||||| |  |||||||| |||||||||| | ||| ||||||||| ||||||||    
T  3955084 attaaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgatcgtatcttattttagaactttttttaatgaaat 3954985  T
Q  251 aaatt 255  Q
    |||||    
T  3954984 aaatt 3954980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 3387821 - 3387685
Alignment:
Q  115 tgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatac 214  Q
    |||||||||||||||| | | | ||||||||||||||    ||||||||||||| ||||||  ||||||||| |||| |||||||||| |  ||||||||    
T  3387821 tgagaaatgttgatcaatcaagggttatagacattaa----agttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatac 3387726  T
Q  215 tatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    |||  ||||||||  || ||||||||| ||| |||||||||    
T  3387725 tattttatcttgttatagaactttttttaataaaataaatt 3387685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 255
Target Start/End: Original strand, 7021489 - 7021704
Alignment:
Q  40 tcagacaaatgtttgaaacatattttgttttactctcttacttccgcacaccatagatgcatgagttacat--gtgttgagaaatgttgatcattgag-g 136  Q
    ||||||||||||||||||||| |||| ||||  ||||||   ||| |||| | |||||  | |||||||||  |||||||||||||||||| | | || |    
T  7021489 tcagacaaatgtttgaaacattttttatttt--tctcttggatccacacaacgtagatataagagttacatatgtgttgagaaatgttgataaattagcg 7021586  T
Q  137 agttatagacattaattaaagttgattacaacatttttatc-tttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataac 235  Q
     |||||||| ||||  ||||||||||||||||||||||  | ||||| |||||||| | |||||||| |  ||||||  | | |||| |||| ||| |||    
T  7021587 ggttatagaaatta--taaagttgattacaacatttttggctttttttgatagtagataaataaataaaggtcaaatcttgtggtattttgttttagaac 7021684  T
Q  236 ttttttcaatgaaataaatt 255  Q
    |||||||||| |||||||||    
T  7021685 ttttttcaataaaataaatt 7021704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 9149026 - 9149130
Alignment:
Q  151 attaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttc-aatgaaa 249  Q
    ||||||||||  || |||||||||| |||||| |||||||| | |||||||| |  | |||||||||  |||||||| ||| |||||||||| |||||||    
T  9149026 attaaagttggctataacatttttagcttttttgatagtagataaataaataaaggtaaaatactatgatatcttgtttta-aacttttttctaatgaaa 9149124  T
Q  250 taaatt 255  Q
    ||||||    
T  9149125 taaatt 9149130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 18476637 - 18476590
Alignment:
Q  155 aagttgattacaacatttttatctttttcgatagtagttgaataaata 202  Q
    ||||||||||||| ||||||| |||||| |||||||| ||||||||||    
T  18476637 aagttgattacaatatttttagcttttttgatagtagatgaataaata 18476590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 32741063 - 32740978
Alignment:
Q  67 ttttactctcttacttccgcacaccatagatgcatgagttac--atgtgttgagaaatgttgatcattgaggagttatagacatta 150  Q
    |||| ||||||| ||||| |||||||||||| || |||||||  |||| ||| ||||||||||||| |  || |||||||||||||    
T  32741063 tttttctctcttgcttccacacaccatagatacaagagttacatatgttttgtgaaatgttgatcaattgggggttatagacatta 32740978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 16426598 - 16426562
Alignment:
Q  115 tgagaaatgttgatcattgaggagttatagacattaa 151  Q
    ||||||||||||||||  |||||||||||||||||||    
T  16426598 tgagaaatgttgatcaacgaggagttatagacattaa 16426562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 255
Target Start/End: Complemental strand, 13054 - 12908
Alignment:
Q  106 tacatgtgttgagaaatgttgatcattgaggag-ttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaataga 204  Q
    |||||||||||||||| |||||||| | ||||| |||||||    ||||||||||||||||||  |||||| |||||| |||||||| |||||||||| |    
T  13054 tacatgtgttgagaaacgttgatcaattaggaggttataga----aattaaagttgattacaatgtttttagcttttttgatagtagatgaataaataaa 12959  T
Q  205 tatcaaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    | ||||||||||    ||||||| ||  |||||||||| ||||||||||||    
T  12958 tgtcaaatactaggacatcttgttttcgaacttttttcgatgaaataaatt 12908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 32676664 - 32676767
Alignment:
Q  151 attaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaat 250  Q
    |||||||||||||| |||||||||| |||||| |||||||| |||||||||| | |||||||| |||  |||||||| ||||||||||||  ||||||||    
T  32676664 attaaagttgattataacatttttaacttttttgatagtagatgaataaata-agatcaaataatatgatatcttgttttataactttttctaatgaaat 32676762  T
Q  251 aaatt 255  Q
    |||||    
T  32676763 aaatt 32676767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 45612330 - 45612519
Alignment:
Q  10 ataatactcatacgagacgtgttggataactcagacaaatgtttgaaacatattttgttttactctcttacttccgcacaccatagatgcatgagttaca 109  Q
    |||| ||||||||||| ||||| ||| |||||| |||||| | | ||||| ||||| |||| ||||||| |||||||||||||||||| || ||||||||    
T  45612330 ataacactcatacgagtcgtgtcggacaactcaaacaaatatctaaaaca-attttttttt-ctctcttgcttccgcacaccatagatacaagagttaca 45612427  T
Q  110 tgtg---ttgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaata 202  Q
    | ||   ||||||||||||||| | | |||  ||||||||    |||| ||||||||| | |||||||| |||||| |||||||| ||||||||||    
T  45612428 tatgtttttgagaaatgttgattaataagggtttatagac----attatagttgattatatcatttttagcttttttgatagtagatgaataaata 45612519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 2641313 - 2641173
Alignment:
Q  109 atgtgttgagaaatgttgatcattga-ggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatat 207  Q
    |||||||||||||||||||||| | | |||||||||||    ||||||||||||||||||  |||||  ||||||  ||||||| | |||||||| |  |    
T  2641313 atgtgttgagaaatgttgatcaatcatggagttataga----aattaaagttgattacaatgtttttgactttttttatagtagataaataaataaaggt 2641218  T
Q  208 caaatactatcgtatcttgtgttataacttttttcaatgaaataa 252  Q
    ||||||| || |||| |||| ||| ||||||||||||||||||||    
T  2641217 caaataccatagtattttgttttagaacttttttcaatgaaataa 2641173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 17733038 - 17732857
Alignment:
Q  17 tcatacgagacgtgttggataactcagacaaatgtttgaaacatattttgttttactctcttacttccgcacaccatagatgcatgagttacatgtg--t 114  Q
    ||||||||| ||||| ||| ||||| ||||||| | |||||||| |||| ||   ||||||| ||||| || | | ||||| || ||||||||||||  |    
T  17733038 tcatacgagccgtgtcggacaactctgacaaatatatgaaacattttttttt---ctctcttgcttccacatatcgtagatacaagagttacatgtgttt 17732942  T
Q  115 tgagaaatgttgatcattgagga-gttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaata 202  Q
    |||||||||||||| | | |||| || ||||||    |||| ||||||||| |||||||||| |||||| |||||||| ||||||||||    
T  17732941 tgagaaatgttgattaattaggaggtaatagac----attacagttgattataacatttttagcttttttgatagtagatgaataaata 17732857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 255
Target Start/End: Original strand, 40289098 - 40289284
Alignment:
Q  67 ttttactctcttacttccgcacaccatagatgcatgagttacatgtgtt--gagaaatgttgatcattgaggagttatagacattaattaaagttgatta 164  Q
    |||| ||||||| ||||| |||||||||||| || || |||||| ||||  |||||||||| |||| | ||| ||| |||||||||     | |||||||    
T  40289098 tttttctctcttgcttccacacaccatagatacaagatttacatatgttttgagaaatgttaatcaattaggggttgtagacattac----aattgatta 40289193  T
Q  165 caacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
        |||||||  ||||| |||||||| |||||||||| |  |||||||||||  ||||||||  || ||||||||  |||||||||||||    
T  40289194 agttatttttagtttttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaactttttctaatgaaataaatt 40289284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 255
Target Start/End: Complemental strand, 44507899 - 44507718
Alignment:
Q  72 ctctcttacttccgcacaccatagatgcatgagttacatgt--gttgagaaatgtt-gatcattgaggagttatagacattaattaaagttgattacaac 168  Q
    ||||||| ||||| |||||||||||  ||||||||| || |  ||||||||||||| ||||| |||||  |||||||||||||    |||  ||||||||    
T  44507899 ctctcttgcttccacacaccatagacacatgagttaaatatatgttgagaaatgttagatcaatgagggattatagacattaa----agtcaattacaac 44507804  T
Q  169 atttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    ||||||||||||||  |||| || || ||||||| |  ||||||   ||| ||| |||| ||| || |||||| |||||||||||||    
T  44507803 atttttatctttttttatagaagatggataaataaaggtcaaatgtcatcatattttgttttagaa-tttttttaatgaaataaatt 44507718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 24614672 - 24614580
Alignment:
Q  150 aattaaagttgattacaacatttttatctttttcgatagtagttgaataaataga-tatcaaatactatcgtatcttgtgttataactttttt 241  Q
    ||||||| |||||||||| ||||||| |||||| |||||||| || ||||||| | | | ||| |||||| ||| |||| |||||||||||||    
T  24614672 aattaaatttgattacaatatttttaacttttttgatagtagatggataaataaaatgttaaaaactatcatattttgttttataactttttt 24614580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 24600985 - 24600933
Alignment:
Q  150 aattaaagttgattacaacatttttatctttttcgatagtagttgaataaata 202  Q
    ||||||| || ||||||||||||||| |||||| |||||||| || |||||||    
T  24600985 aattaaatttaattacaacatttttaacttttttgatagtagatggataaata 24600933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 12844119 - 12843971
Alignment:
Q  67 ttttactctcttacttccgcacaccatagatgcatgagttacatgtgtt--gagaaatgttgatcattgaggagttatagacattaattaaagttgatta 164  Q
    |||| ||||||| ||||| | |||||||||| || ||||||||| ||||  ||||||||||||||| | ||| |||||| ||||||     |||||||||    
T  12844119 tttttctctcttgcttccacgcaccatagatacaagagttacatatgttttgagaaatgttgatcaattaggggttatacacattat----agttgatta 12844024  T
Q  165 caacatttttatctttttcgatagtagttgaataaatagatatcaaatactat 217  Q
     | |||||||| |||||| |||||||| |||||||||| |  |||||||||||    
T  12844023 tatcatttttagcttttttgatagtagatgaataaataaaggtcaaatactat 12843971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 17540233 - 17540085
Alignment:
Q  67 ttttactctcttacttccgcacaccatagatgcatgagttac--atgtgttgagaaatgttgatcattgaggagttatagacattaattaaagttgatta 164  Q
    |||| ||||||| |||||||||||||||||| || |||||||  |||| ||||||||||||||||| | ||| |||||| |    | ||| |||||||||    
T  17540233 tttttctctcttgcttccgcacaccatagatacaagagttacatatgttttgagaaatgttgatcaattaggggttataaa----agttatagttgatta 17540138  T
Q  165 caacatttttatctttttcgatagtagttgaataaatagatatcaaatactat 217  Q
     | |||||||| |||||| |||||||| | |||||||| |  |||||||||||    
T  17540137 tatcatttttagcttttttgatagtagataaataaataaaggtcaaatactat 17540085  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 57213 - 57082
Alignment:
Q  67 ttttactctcttacttccgcacaccatagatgcatgagttacatgtgtt--gagaaatgttgatca--ttgaggagttatagacattaattaaagttgat 162  Q
    |||| ||||||| ||||| || ||| ||||| || ||||||||| ||||  |||||||||||||||  | |||| ||||||||||||||    |||||||    
T  57213 tttttctctcttgcttccacataccgtagatacaagagttacatatgtttggagaaatgttgatcaactagagg-gttatagacattaa----agttgat 57119  T
Q  163 tacaacatttttatctttttcgatagtagttgaataa 199  Q
    || |||||||||| |||||| |||||||| |||||||    
T  57118 tataacatttttaccttttttgatagtagatgaataa 57082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 33234884 - 33234985
Alignment:
Q  151 attaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaat 250  Q
    ||||||||||||||||||||||| |   ||||||||||||| || ||||||| |  ||||||||||| |||||||||  || ||||||||| ||||||||    
T  33234884 attaaagttgattacaacattttga-aattttcgatagtagatggataaata-aggtcaaatactattgtatcttgttataaaactttttt-aatgaaat 33234980  T
Q  251 aaatt 255  Q
    |||||    
T  33234981 aaatt 33234985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 112 - 253
Target Start/End: Complemental strand, 27063910 - 27063772
Alignment:
Q  112 tgttgagaaatgttgatca-ttgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaa 210  Q
    ||||||||||||||||||| || ||||||||||||    |||| ||||| ||||||||||||||| |||||  || ||||| |||||||||| |  |||     
T  27063910 tgttgagaaatgttgatcaatttaggagttataga----aatttaagttaattacaacatttttagcttttatgacagtagatgaataaataaaggtcat 27063815  T
Q  211 atactatcgtatcttgtgttataacttttttcaatgaaataaa 253  Q
    ||| ||| ||||||||| ||| ||| ||||| || ||||||||    
T  27063814 atattatggtatcttgttttagaacgttttttaaagaaataaa 27063772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 43921978 - 43922072
Alignment:
Q  158 ttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataa 252  Q
    ||||||| |||||||||| |||||| |||| ||| |||||||||| | |||||||||||   | |||||| ||| ||||||||  ||||||||||    
T  43921978 ttgattataacatttttagcttttttgatattagatgaataaataaagatcaaatactacgatgtcttgttttagaactttttctaatgaaataa 43922072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 17715871 - 17715977
Alignment:
Q  150 aattaaagttgattacaacatttttatctttttcg-atagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaa 248  Q
    ||||||||||||||||||  |||||  ||||||   ||| ||| |||||||||| |  ||||||  ||||||||||||| ||| ||| ||||||||| ||    
T  17715871 aattaaagttgattacaatgtttttggcttttttttataatagatgaataaataaaggtcaaattttatcgtatcttgttttagaacctttttcaattaa 17715970  T
Q  249 ataaatt 255  Q
    |||||||    
T  17715971 ataaatt 17715977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 19017100 - 19017206
Alignment:
Q  150 aattaaagttgattacaacatttttatctttttcg-atagtagttgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaa 248  Q
    ||||||||||||||||||  |||||  ||||||   ||| ||| |||||||||| |  ||||||  ||||||||||||| ||| ||| ||||||||| ||    
T  19017100 aattaaagttgattacaatgtttttggcttttttttataatagatgaataaataaaggtcaaattttatcgtatcttgttttagaacctttttcaattaa 19017199  T
Q  249 ataaatt 255  Q
    |||||||    
T  19017200 ataaatt 19017206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 209355 - 209219
Alignment:
Q  115 tgagaaatgttgatcattgaggagttatagacattaattaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatatcaaatac 214  Q
    ||||||||||||||||  |||| ||||| |||    ||||||||| |||||||| ||||||  ||||||||| |||| || ||||||| |   ||||||     
T  209355 tgagaaatgttgatcaacgaggggttatcgac----attaaagtttattacaacgtttttaaatttttcgattgtagatggataaataaaggccaaatat 209260  T
Q  215 tatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    | | |||| ||||  || ||||||||| |||||||||||||    
T  209259 tgttgtattttgttatagaactttttttaatgaaataaatt 209219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 70143 - 70205
Alignment:
Q  193 tgaataaatagatatcaaatactatcgtatcttgtgttataacttttttcaatgaaataaatt 255  Q
    |||||||||| || |||||||||||  |||||||| ||| ||||||||||||| || ||||||    
T  70143 tgaataaataaatgtcaaatactatgatatcttgttttagaacttttttcaataaagtaaatt 70205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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