View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19371_low_1 (Length: 803)

Name: NF19371_low_1
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19371_low_1
NF19371_low_1
[»] chr2 (5 HSPs)
chr2 (464-581)||(16295-16412)
chr2 (29-89)||(29790278-29790338)
chr2 (526-583)||(18990697-18990754)
chr2 (554-583)||(16877302-16877331)
chr2 (554-583)||(16989435-16989464)
[»] chr5 (1 HSPs)
chr5 (424-583)||(22753804-22753962)
[»] chr7 (2 HSPs)
chr7 (522-583)||(10868181-10868242)
chr7 (22-89)||(11244738-11244805)
[»] chr4 (3 HSPs)
chr4 (424-527)||(22677295-22677398)
chr4 (546-583)||(10670258-10670295)
chr4 (546-583)||(10883897-10883934)
[»] scaffold0290 (2 HSPs)
scaffold0290 (517-583)||(17143-17209)
scaffold0290 (517-583)||(4127-4193)
[»] chr3 (1 HSPs)
chr3 (23-139)||(22801923-22802036)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 9e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 464 - 581
Target Start/End: Complemental strand, 16412 - 16295
Alignment:
Q  464 gcgtgtagttaccgacattgcatcttaaaacattcctcgccataagtgaatctcatgaacatttatcttctgagacgttcggctggtaatattccaataa 563  Q
    ||||||| |||||||||||||||| | |||||||| ||| |||||  ||||||| | |||||||||| ||||| ||||||||||||||||||||||||||    
T  16412 gcgtgtaattaccgacattgcatcattaaacattcttcgtcataaaagaatctcctaaacatttatcctctgatacgttcggctggtaatattccaataa 16313  T
Q  564 ctgacgagtgagatatta 581  Q
    || ||||||| |||||||    
T  16312 ctaacgagtgggatatta 16295  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 29790338 - 29790278
Alignment:
Q  29 tcaagctatctcacacaacaccatcattcatgggaaaagagttctatctagtgaactcacc 89  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  29790338 tcaacctatctcacacaacaccatcatccatgggaaaagagttctatctagagaactcacc 29790278  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 583
Target Start/End: Complemental strand, 18990754 - 18990697
Alignment:
Q  526 ttatcttctgagacgttcggctggtaatattccaataactgacgagtgagatattaca 583  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  18990754 ttatcctctgatacgttcggctggtaatattccaacaactgacgagtgggatattaca 18990697  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 583
Target Start/End: Complemental strand, 16877331 - 16877302
Alignment:
Q  554 attccaataactgacgagtgagatattaca 583  Q
    ||||||||||||||||||||||||||||||    
T  16877331 attccaataactgacgagtgagatattaca 16877302  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 583
Target Start/End: Complemental strand, 16989464 - 16989435
Alignment:
Q  554 attccaataactgacgagtgagatattaca 583  Q
    ||||||||||||||||||||||||||||||    
T  16989464 attccaataactgacgagtgagatattaca 16989435  T

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Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 424 - 583
Target Start/End: Original strand, 22753804 - 22753962
Alignment:
Q  424 catcttaaacacgcgtaacttgatactaattactgaacatgcgtgtagttaccgacattgcatcttaaaacattcctcgccataagtgaatctcatgaac 523  Q
    |||||||||||||| |||||||||||  || ||||||||| | ||||| |||||| |||||||| |||||||||||| | ||||| |||||||| |||||    
T  22753804 catcttaaacacgcctaacttgataccgataactgaacatacatgtagctaccgaaattgcatcataaaacattccttgtcataaatgaatctcgtgaac 22753903  T
Q  524 atttatcttctgagacgttcggctggtaatattccaataactgacgagtgagatattaca 583  Q
    |||| || ||||  || |||| ||| | | |||||||| ||||||||||| ||| |||||    
T  22753904 atttgtcctctggtacattcgactgatgaaattccaat-actgacgagtgggatgttaca 22753962  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 522 - 583
Target Start/End: Original strand, 10868181 - 10868242
Alignment:
Q  522 acatttatcttctgagacgttcggctggtaatattccaataactgacgagtgagatattaca 583  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  10868181 acatttatcctctggtacgttcggctggtaatattccaataactgacgagtgagatattaca 10868242  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 11244805 - 11244738
Alignment:
Q  22 ataatcgtcaagctatctcacacaacaccatcattcatgggaaaagagttctatctagtgaactcacc 89  Q
    |||||| ||||| | |||||||||||||||||||||||||||  |  ||||| ||||| |||||||||    
T  11244805 ataatcatcaagttttctcacacaacaccatcattcatgggaggaaggttctttctagagaactcacc 11244738  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 527
Target Start/End: Original strand, 22677295 - 22677398
Alignment:
Q  424 catcttaaacacgcgtaacttgatactaattactgaacatgcgtgtagttaccgacattgcatcttaaaacattcctcgccataagtgaatctcatgaac 523  Q
    |||||||||||| | |||||||||| | || ||||||| ||||||||  ||||||||||||||| | |||||||| | | ||||| ||||||  ||||||    
T  22677295 catcttaaacacacctaacttgatattgataactgaacctgcgtgtaactaccgacattgcatcattaaacattcatggtcataaatgaatccgatgaac 22677394  T
Q  524 attt 527  Q
    ||||    
T  22677395 attt 22677398  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 583
Target Start/End: Original strand, 10670258 - 10670295
Alignment:
Q  546 ctggtaatattccaataactgacgagtgagatattaca 583  Q
    |||||||||||||||||||||||||||| |||||||||    
T  10670258 ctggtaatattccaataactgacgagtgggatattaca 10670295  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 583
Target Start/End: Original strand, 10883897 - 10883934
Alignment:
Q  546 ctggtaatattccaataactgacgagtgagatattaca 583  Q
    |||||||||||||||||||||||||||| |||||||||    
T  10883897 ctggtaatattccaataactgacgagtgggatattaca 10883934  T

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Target: scaffold0290 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 583
Target Start/End: Complemental strand, 17209 - 17143
Alignment:
Q  517 catgaacatttatcttctgagacgttcggctggtaatattccaataactgacgagtgagatattaca 583  Q
    |||||| | ||||| ||||| ||||||||||||||||||||||| |||| ||||||| |||||||||    
T  17209 catgaatacttatcctctgatacgttcggctggtaatattccaacaactaacgagtgggatattaca 17143  T

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Target: scaffold0290; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 583
Target Start/End: Complemental strand, 4193 - 4127
Alignment:
Q  517 catgaacatttatcttctgagacgttcggctggtaatattccaataactgacgagtgagatattaca 583  Q
    |||||| | ||||| ||| | ||||||| ||||||||||||||| | |||||||||| |||||||||    
T  4193 catgaatacttatcctctaatacgttcgactggtaatattccaacatctgacgagtgggatattaca 4127  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 22801923 - 22802036
Alignment:
Q  23 taatcgtcaagctatctcacacaacaccatcattcatgggaaaagagttctatctagtgaactcaccacaaatccaagctacaacaagaatctaatagct 122  Q
    ||||| |||||  |||||||| ||||  | ||| |||||||||| |||||||||||| |||||| |||| ||||||||||  ||||||||| ||| ||||    
T  22801923 taatcatcaagagatctcacataacataaccatccatgggaaaa-agttctatctagagaactctccac-aatccaagctttaacaagaatttaacagct 22802020  T
Q  123 cctagacaaaaccctaa 139  Q
    ||||| |||||||||||    
T  22802021 cctag-caaaaccctaa 22802036  T

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