View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_low_10 (Length: 324)
Name: NF19371_low_10
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 21383507 - 21383737
Alignment:
| Q |
16 |
ccaattaccagcgttacatatgatatagaatattcaatgtctccttcnnnnnnnn-gaatattcaatgtcttttttcaactaagaatattcaatgtctta |
114 |
Q |
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| T |
21383507 |
ccaattaccagcgttacatatgata--gaatattcaatgtctccttcagaaaaaaagaatattcaatgtcttttttcaactaagaatattcaatgtctta |
21383604 |
T |
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| Q |
115 |
ttatctatcatacagatgtgtaatattaactgcacaagaaaactgaaaattccatacatacataaataatttagataatttttacatacttaataattga |
214 |
Q |
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| T |
21383605 |
ttatctatcatacagatgtgtaatattaactgcacaagaaaactgaaaattccatacatacattaataatttagataatttttacatacttaataattga |
21383704 |
T |
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| Q |
215 |
ttattgcatatcacccacttacgtctaagtttt |
247 |
Q |
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| T |
21383705 |
ttattgcataacacccacttacgtctaagtttt |
21383737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 21383774 - 21383818
Alignment:
| Q |
247 |
tgtaagatttaaagttcaacaacataacatataagtaagggattc |
291 |
Q |
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| T |
21383774 |
tgtaagatttaaagttcaacaacataacatataagtaagggattc |
21383818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 21383832 - 21383873
Alignment:
| Q |
272 |
aacatataagtaagggattcataattttgatctctaaatatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
21383832 |
aacatataagtaagggattcataattttgatctctaaatatt |
21383873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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