View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_low_14 (Length: 264)
Name: NF19371_low_14
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_low_14 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 75818 - 75571
Alignment:
| Q |
1 |
acaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaatacaaattatatttttctacca |
100 |
Q |
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| T |
75818 |
acaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaatacaaattatatttttctacca |
75719 |
T |
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| Q |
101 |
aacatttnnnnnnnn-tgcaaaatcaaactcttttgcaagagcccctcttttgagattagaattcttttgtcagaacagaatatgagtgagtcacattaa |
199 |
Q |
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| T |
75718 |
aacatttaaaaaaaaatgcaaaatcaaactcttttgcaagagcccctcttttgagattagaattcttttgtcagaacagaatatgagtgagtcacattaa |
75619 |
T |
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| Q |
200 |
ctatagatctggcaaagatgaggaatttttatggttttggttggtttt |
247 |
Q |
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| T |
75618 |
ctatagatctggcaaagatgaggaatttttatggttttggttggtttt |
75571 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 28500414 - 28500489
Alignment:
| Q |
3 |
aaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
78 |
Q |
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| T |
28500414 |
aaaatacaaaatgaatgaagtgtagttagtaaatccctttctagtcgtcaatctagaaagagaggagtattctaaa |
28500489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 29812825 - 29812900
Alignment:
| Q |
3 |
aaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
78 |
Q |
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| T |
29812825 |
aaaatacaaaatgaatgaagtgtagttagtaaatccctttctagtcgtcaatctagaaagagaggagtattctaaa |
29812900 |
T |
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