View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_low_15 (Length: 261)
Name: NF19371_low_15
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 6353356 - 6353610
Alignment:
| Q |
7 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggac |
106 |
Q |
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| T |
6353356 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggac |
6353455 |
T |
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| Q |
107 |
agaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctt |
206 |
Q |
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| T |
6353456 |
agaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctt |
6353555 |
T |
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| Q |
207 |
tgtagtgaagaggtggcgaggtggagggtttgtgacctcgccaccattcaacatt |
261 |
Q |
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| T |
6353556 |
tgtagtgaagaggtggcgaggtggagggtttgtgacctcgccaccattcaacatt |
6353610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 23601120 - 23601262
Alignment:
| Q |
97 |
tggaatggacagaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttacc |
196 |
Q |
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|||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
23601120 |
tggaatggacagaatttctgttacatcaatagcatcaaacaaattttgtatgacagaaatgttccaagaattcagactcgggtttagcaaagca-ttacc |
23601218 |
T |
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| Q |
197 |
ataagatctttgtagtgaagaggtggcgaggtggagggtttgtg |
240 |
Q |
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| T |
23601219 |
gtaagatatttatagtgaagaggtggcaaggttgagggtttgtg |
23601262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 23601072 - 23601121
Alignment:
| Q |
7 |
ggagcagagacggtaagctgttttgacagtataagctccacccaccgttg |
56 |
Q |
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||||||||||| |||| |||||||||||||||| ||||| ||||||||| |
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| T |
23601072 |
ggagcagagacaataagttgttttgacagtataaactccatccaccgttg |
23601121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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