View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19371_low_17 (Length: 249)

Name: NF19371_low_17
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19371_low_17
NF19371_low_17
[»] chr6 (8 HSPs)
chr6 (1-235)||(29364303-29364537)
chr6 (1-110)||(29353966-29354078)
chr6 (1-122)||(29879718-29879842)
chr6 (204-235)||(24257753-24257784)
chr6 (204-235)||(24270730-24270761)
chr6 (204-235)||(29346015-29346046)
chr6 (204-235)||(29888470-29888501)
chr6 (204-235)||(29931715-29931746)
[»] scaffold0054 (2 HSPs)
scaffold0054 (1-109)||(58416-58527)
scaffold0054 (204-235)||(52349-52380)
[»] chr5 (2 HSPs)
chr5 (12-67)||(27754356-27754411)
chr5 (130-184)||(27754459-27754514)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 29364303 - 29364537
Alignment:
Q  1 gtaacaacatataaattttcagctggtgtttctaaccagaagcaaaaatagtatgataatcactacagcataaataatcagttatcattctattttgata 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364303 gtaacaacatgtaaattttcagctggtgtttctaaccagaagcaaaaatagtatgataatcactacagcataaataatcagttatcattctattttgata 29364402  T
Q  101 cttctgattcagagaagtaaatcgaaatcctggaagtgtgggcctcagtacaagtaaattttagcctacaaaatttactacaacnnnnnnnctctacttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  29364403 cttctgattcagagaagtaaatcgaaatcctggaagtgtgggcctcagtacaagtaaattttagcctacaaaatttactacaacaaaaaaactctacttt 29364502  T
Q  201 aaatacactattttctaaatctactcatcttttgt 235  Q
    |||||||||||||||||||||||||||||||||||    
T  29364503 aaatacactattttctaaatctactcatcttttgt 29364537  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29353966 - 29354078
Alignment:
Q  1 gtaacaacatataaattttcagctggtgtttctaaccagaa---gcaaaaatagtatgataatcactacagcataaataatcagttatcattctattttg 97  Q
    |||||| ||| || ||||||||||||| |||||||||||||   ||||||| |||| |||| | ||| || |||||||||| |||| |||||||||||||    
T  29353966 gtaacagcatgtatattttcagctggtatttctaaccagaagaagcaaaaagagtaagatactaactgcaacataaataattagttgtcattctattttg 29354065  T
Q  98 atacttctgattc 110  Q
    |||||||| ||||    
T  29354066 atacttctaattc 29354078  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 29879842 - 29879718
Alignment:
Q  1 gtaacaacatataaattttcagctggtgtttctaaccagaa---gcaaaaatagtatgataatcactacagcataaataatcagttatcattctattttg 97  Q
    |||||| ||| || |||||||||| ||||||||||||||||   | ||||   ||| || ||| |||||| |||||||||||| || |||||||| ||||    
T  29879842 gtaacatcatgtatattttcagctagtgtttctaaccagaacaaggaaaatgggtaagacaataactacaacataaataatcatttttcattctactttg 29879743  T
Q  98 atacttctgattcagagaagtaaat 122  Q
    |||||||||||||| | ||||||||    
T  29879742 atacttctgattcataaaagtaaat 29879718  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 24257753 - 24257784
Alignment:
Q  204 tacactattttctaaatctactcatcttttgt 235  Q
    ||||||||||||||||||||||||||||||||    
T  24257753 tacactattttctaaatctactcatcttttgt 24257784  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 24270730 - 24270761
Alignment:
Q  204 tacactattttctaaatctactcatcttttgt 235  Q
    ||||||||||||||||||||||||||||||||    
T  24270730 tacactattttctaaatctactcatcttttgt 24270761  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 29346015 - 29346046
Alignment:
Q  204 tacactattttctaaatctactcatcttttgt 235  Q
    ||||||||||||||||||||||||||||||||    
T  29346015 tacactattttctaaatctactcatcttttgt 29346046  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 29888501 - 29888470
Alignment:
Q  204 tacactattttctaaatctactcatcttttgt 235  Q
    ||||||||||||||||||||||||||||||||    
T  29888501 tacactattttctaaatctactcatcttttgt 29888470  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 29931746 - 29931715
Alignment:
Q  204 tacactattttctaaatctactcatcttttgt 235  Q
    ||||||||||||||||||||||||||||||||    
T  29931746 tacactattttctaaatctactcatcttttgt 29931715  T

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Target: scaffold0054 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 58416 - 58527
Alignment:
Q  1 gtaacaacatataaattttcagctggtgtttctaaccagaa---gcaaaaatagtatgataatcactacagcataaataatcagttatcattctattttg 97  Q
    |||||| ||| || |||||| ||||||||||||||||||||   ||||||   ||| || ||| |||||| |||||||||||| ||||||||||||||||    
T  58416 gtaacatcatgtatattttcggctggtgtttctaaccagaacaagcaaaatgggtaagacaataactacaacataaataatcacttatcattctattttg 58515  T
Q  98 atacttctgatt 109  Q
    ||| ||||||||    
T  58516 ataattctgatt 58527  T

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Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Original strand, 52349 - 52380
Alignment:
Q  204 tacactattttctaaatctactcatcttttgt 235  Q
    ||||||||||||||||||||||||||||||||    
T  52349 tacactattttctaaatctactcatcttttgt 52380  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 27754356 - 27754411
Alignment:
Q  12 taaattttcagctggtgtttctaaccagaagcaaaaatagtatgataatcactaca 67  Q
    ||||||||||||||||||||||||| ||| ||||||| |||| |||||| ||||||    
T  27754356 taaattttcagctggtgtttctaactagatgcaaaaagagtaagataataactaca 27754411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 27754459 - 27754514
Alignment:
Q  130 ctggaagtgtgggcctcagtacaagt-aaattttagcctacaaaatttactacaac 184  Q
    |||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||    
T  27754459 ctggaagtgtgggcctcattacaagtaaaattttagcctataagatttactacaac 27754514  T

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