View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_low_22 (Length: 237)
Name: NF19371_low_22
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 39725942 - 39725837
Alignment:
| Q |
9 |
tgtcgaagaaaatctatatctcaaagtagaaaatcatcggtttgggaaattttccgtttaggtgttgtccctactccagaaataggattgcaagacctca |
108 |
Q |
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| T |
39725942 |
tgtccaagaaaatctatatctcaaagtagaaaatcatcggtttgggaaattttccgtttaggtgttgtccctactccagaaataggattgcaagacctca |
39725843 |
T |
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| Q |
109 |
aggttc |
114 |
Q |
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|||||| |
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| T |
39725842 |
aggttc |
39725837 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 39725770 - 39725736
Alignment:
| Q |
184 |
cttttaatgataaaggtggcaaaatgagtaagaag |
218 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
39725770 |
cttttaatgataaaagtggcaaaatgagtaagaag |
39725736 |
T |
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