View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_low_24 (Length: 210)
Name: NF19371_low_24
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 28894800 - 28894852
Alignment:
| Q |
17 |
aatctggagacaaaatcaactcaactcaagagcagccaaacataggcttgaca |
69 |
Q |
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| T |
28894800 |
aatctggagacaaaatcaactcaactcaagagcagccaaacataggcttgaca |
28894852 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 28894972 - 28895008
Alignment:
| Q |
159 |
ctcgaagttagtgaaaatcttgagctgagagaataat |
195 |
Q |
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| T |
28894972 |
ctcgaagttagtgaaaatcctgagctgagagagtaat |
28895008 |
T |
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