View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_low_3 (Length: 512)
Name: NF19371_low_3
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 11733138 - 11733612
Alignment:
| Q |
19 |
ggtgtaccatatttacataaaatataacagatgatatctcaactttttctcttgtgcatccattcttaatcctacccagctttgtgtctatcaactatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11733138 |
ggtgtaccatatttacataaaatataacagatgatatctcaactttttctcttgtgcatccattcttaatcctacccagctttgtgtctatcaactatca |
11733237 |
T |
|
| Q |
119 |
taacaatctaatctgtataacatttgggttaatcgtcttactctaatctctaaaacattgaatttacattctaactcagacaacatcatataacttaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11733238 |
taacaatctaatctgtataacatttgggttaatcgtcttactctaatctctaaaacattgaatttacattctaactcagacaacatcatataacttaaaa |
11733337 |
T |
|
| Q |
219 |
taatctgattaattaatcacatcaaaattaaaacaaaaattacaaacttacatgttggtgtagcaagcttcaaagtcctgaagcaaatatcataaagagc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11733338 |
taatctgattaattaatcacatcaaaattaaaacaaaaattataaacttacatgttggtgtagcaagcttcaaagtcctgaaacaaatatcataaagagc |
11733437 |
T |
|
| Q |
319 |
ctcgttatccaacaccatgcattcatccgcattctcaacaagctgatgaacagaaagcgtggcattatacggttctacaaccgtatcagacaccttaggt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11733438 |
ctcgttatccaacaccatgcattcatccgcattctcaacaagctgatgaacagaaagcgtggcattatacggttctacaaccgtatcagacaccttaggt |
11733537 |
T |
|
| Q |
419 |
gaaggaaacaccgaaaacgtcaacatcatacgatccggatattcttctcgaatcttcgaaatcaaaagtgttccc |
493 |
Q |
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| T |
11733538 |
gaaggaaacaccgaaaacgtcaacatcatacgatccggatattcttctcgaatcttcgaaatcaaaagtgttccc |
11733612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 262 - 493
Target Start/End: Original strand, 38178277 - 38178508
Alignment:
| Q |
262 |
aaacttacatgttggtgtagcaagcttcaaagtcctgaagcaaatatcataaagagcctcgttatccaacaccatgcattcatccgcattctcaacaagc |
361 |
Q |
| |
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|||| |||| |||||||| ||||||||||| || | ||||||||||||||| || ||||| || ||||| |||||||||||||| ||||| ||||||||| |
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| T |
38178277 |
aaacctacaagttggtgtggcaagcttcaatgtacggaagcaaatatcatagagtgcctcattgtccaaaaccatgcattcatctgcattttcaacaagc |
38178376 |
T |
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| Q |
362 |
tgatgaacagaaagcgtggcattatacggttctacaaccgtatcagacaccttaggtgaaggaaacaccgaaaacgtcaacatcatacgatccggatatt |
461 |
Q |
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||||| |||||||| || ||||| || || || ||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
38178377 |
tgatgcacagaaagggttgcattgtaaggctccacaactgtatctgaaaccttaggtgaaggaaacacagaaaacgtcaacatcatacgatccggatact |
38178476 |
T |
|
| Q |
462 |
cttctcgaatcttcgaaatcaaaagtgttccc |
493 |
Q |
| |
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|||| | |||||||||||| | |||||||||| |
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| T |
38178477 |
cttccctaatcttcgaaataagaagtgttccc |
38178508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 486
Target Start/End: Original strand, 5935421 - 5935575
Alignment:
| Q |
332 |
accatgcattcatccgcattctcaacaagctgatgaacagaaagcgtggcattatacggttctacaaccgtatcagacaccttaggtgaaggaaacaccg |
431 |
Q |
| |
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||||| |||||||| || || ||||||||||| |||||||| || || ||||| || ||||| || || || ||||| |||||||| ||||| || || | |
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| T |
5935421 |
accatacattcatctgcgttttcaacaagctggtgaacagatagggtagcattgtagggttcaaccacagtgtcagaaaccttaggagaagggaaaacag |
5935520 |
T |
|
| Q |
432 |
aaaacgtcaacatcatacgatccggatattcttctcgaatcttcgaaatcaaaag |
486 |
Q |
| |
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| || || | |||||| | ||| || |||||||| | ||||| ||||||||||| |
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| T |
5935521 |
agaaagtaagcatcatcctatctgggtattcttccctgatctttgaaatcaaaag |
5935575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 296 - 483
Target Start/End: Complemental strand, 34840303 - 34840116
Alignment:
| Q |
296 |
ctgaagcaaatatcataaagagcctcgttatccaacaccatgcattcatccgcattctcaacaagctgatgaacagaaagcgtggcattatacggttcta |
395 |
Q |
| |
|
|||||||| ||||| || | |||||| ||||| | |||||| || || || ||||||||||| | ||||||||||||||| || |||||||| || || | |
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| T |
34840303 |
ctgaagcagatatcgtacaaagcctcattatcaagcaccatacactcgtcagcattctcaaccaactgatgaacagaaagagtagcattataaggctcaa |
34840204 |
T |
|
| Q |
396 |
caaccgtatcagacaccttaggtgaaggaaacaccgaaaacgtcaacatcatacgatccggatattcttctcgaatcttcgaaatcaa |
483 |
Q |
| |
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|||| |||||||| ||||| || ||||||||||||||||||||||||||||| | ||| |||||||| |||| ||||||||||||||| |
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| T |
34840203 |
caacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcaggatattcctctctaatcttcgaaatcaa |
34840116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 493
Target Start/End: Original strand, 45453138 - 45453333
Alignment:
| Q |
298 |
gaagcaaatatcataaagagcctcgttatccaacaccatgcattcatccgcattctcaacaagctgatgaacagaaagcgtggcattatacggttctaca |
397 |
Q |
| |
|
||||||||||||||| ||||| || ||||||| |||||||||||||| |||||||||||||| || || ||||| || || ||||| || ||||| ||| |
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| T |
45453138 |
gaagcaaatatcatagagagcttcattatccagaaccatgcattcatcagcattctcaacaagttggtggacagagagtgtagcattgtaaggttcaaca |
45453237 |
T |
|
| Q |
398 |
accgtatcagacaccttaggtgaaggaaacaccgaaaacgtcaacatcatacgatccggatattcttctcgaatcttcgaaatcaaaagtgttccc |
493 |
Q |
| |
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|| || ||||| |||||||| || || ||||| || || || | |||||| ||||| || ||||| || | ||||| |||||||||||||||||| |
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| T |
45453238 |
acagtgtcagataccttaggagatgggaacacagagaaagtaagcatcattcgatcagggtattcctccctgatcttagaaatcaaaagtgttccc |
45453333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 462
Target Start/End: Complemental strand, 3738917 - 3738857
Alignment:
| Q |
402 |
tatcagacaccttaggtgaaggaaacaccgaaaacgtcaacatcatacgatccggatattc |
462 |
Q |
| |
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||||||| ||||| ||||||||||||| |||||||||||||| ||| | ||| |||||||| |
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| T |
3738917 |
tatcagaaaccttcggtgaaggaaacatcgaaaacgtcaacaacatcctatcaggatattc |
3738857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 480
Target Start/End: Original strand, 40916991 - 40917175
Alignment:
| Q |
296 |
ctgaagcaaatatcataaagagcctcgttatccaacaccatgcattcatccgcattctcaacaagctgatgaacagaaagcgtggcattatacggttcta |
395 |
Q |
| |
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||||| || |||||||| || ||||| ||||| | ||||||||||| || ||||| ||||| || ||||||||||| || || ||||| || ||||| | |
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| T |
40916991 |
ctgaaacagatatcatagagtgcctcattatcaagaaccatgcattcgtctgcattttcaactagttgatgaacagagagagttgcattgtagggttcca |
40917090 |
T |
|
| Q |
396 |
caaccgtatcagacaccttaggtgaaggaaacaccgaaaacgtcaacatcatacgatccggatattcttctcgaatcttcgaaat |
480 |
Q |
| |
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| T |
40917091 |
ccacggtatcagaaacctttggtgaagggaacactgagaaagtcaacatcattctgtctggatactcttctctgatcttggaaat |
40917175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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