View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_low_4 (Length: 477)
Name: NF19371_low_4
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 224 - 460
Target Start/End: Complemental strand, 12727523 - 12727287
Alignment:
| Q |
224 |
tcatggaaaccatgttgtaacctctagcccttaattaatcttgtcccaaggctatgctcattgttcaatcaaaataaggagcttatgcttcacatcgatc |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
12727523 |
tcatggaaaccatgttgtaacctctagcccttaattaatcttgtcccaaggctatgctcattgctccataaaaataaggagcttatgcttcacatcgatc |
12727424 |
T |
|
| Q |
324 |
caaatagaagaagaaatatgaaaggaaatagatcccttagatatcagtactatagcccttgtaagaatggtccatcggttatttgaagttaccatatccc |
423 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12727423 |
caaatagaagaaataatatgaaaggaaatagatcccttagatatcagtactatagcccttgtaagaatggtccatcggttatttgaagttaccatatccc |
12727324 |
T |
|
| Q |
424 |
aactaattaatcttgaaggaggaagcatcattgatgt |
460 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
12727323 |
aactaattaatcttgaaggaggaagcatcattgatgt |
12727287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 224 - 449
Target Start/End: Complemental strand, 12790435 - 12790219
Alignment:
| Q |
224 |
tcatggaaaccatgttgtaacctctagcccttaattaatcttgtcccaaggctatgctcattgttcaatcaaaataaggagcttatgcttcacatcgatc |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
12790435 |
tcatggaaaccatgttgtaacctctagcccttaattaatcttgtcccaaggctatgctcattgctccataaaaataaggagcttatgcttcacatcgatc |
12790336 |
T |
|
| Q |
324 |
caaatagaagaagaaatatgaaaggaaatagatcccttagatatcagtactatagcccttgtaagaatggtccatcggttatttgaagttaccatatccc |
423 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |
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| T |
12790335 |
caaatagaagaaataatatgaaaggaaatagatcccttagatatcagtactatag-ccttgttagaatggtccatcggttatttgaagtta--------c |
12790245 |
T |
|
| Q |
424 |
aactaattaatcttgaaggaggaagc |
449 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12790244 |
aactaattaatcttgaaggaggaagc |
12790219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 12791025 - 12790824
Alignment:
| Q |
23 |
gttaacttcatacaattcaaccatctattctttaagtgtcgaggaacaatagtgtttatta-ttccataatgttcaccctgaaaagaagtagtgatgtgc |
121 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
12791025 |
gttaacttcatacaattcaaccatctattccttaagtgtcgaggaacaatagtgtttattaattccataatgctcaccctgaaaagaagtagtgatgtgc |
12790926 |
T |
|
| Q |
122 |
agattgacaacaaatccacctnnnnnnntagcatttttatccctgaaaattcctgcacaaattgcagggcttggaaaatccttaacattatcatttacat |
221 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12790925 |
agattgacaacaaatccacctaaaaaaatagcatttttatccctgaaaattcctgcacaaattgcagggcttggaaaatccttaacattatcatttatat |
12790826 |
T |
|
| Q |
222 |
ta |
223 |
Q |
| |
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|| |
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|
| T |
12790825 |
ta |
12790824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 12728112 - 12727912
Alignment:
| Q |
23 |
gttaacttcatacaattcaaccatctattctttaagtgtcgaggaacaatagtgtttattattccataatgttcaccctgaaaagaagtagtgatgtgca |
122 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |
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| T |
12728112 |
gttaacttcatacaattcaaccatctattccttaagtgtcgaggaacaatagtgtttattatttcataatgctcaccctgaaaagaagtagtgatgtgta |
12728013 |
T |
|
| Q |
123 |
gattgacaacaaatccacctnnnnnnntagcatttttatccctgaaaattcctgcacaaattgcagggcttggaaaatccttaacattatcatttacatt |
222 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12728012 |
gattgacaacaaatccacctaaaaaaatagcatttttatccctgaaaattcctgcacaaattgcagggcttggaaaatccttaacattatcatttatatt |
12727913 |
T |
|
| Q |
223 |
a |
223 |
Q |
| |
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| |
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|
| T |
12727912 |
a |
12727912 |
T |
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