View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_low_5 (Length: 471)
Name: NF19371_low_5
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 6354050 - 6353595
Alignment:
| Q |
18 |
agcaggaccttcctgaaacgcgttattgttgcacctaggacaacagtccctgtgtccagcacatacaacagtagccgaaaagagttatttttcttcatat |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6354050 |
agcaggaccttcctgaaacgtgttattgttgcacctaggacaacagtccctgtgtccagcacatacaacagtagccgaaaagagttatttttcttcatat |
6353951 |
T |
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| Q |
118 |
atatccaacatgagatttcaaggcatgtttcaactagacaacaccagaatgctacttgcatgactctccattgatgattatactcacgaaaaatagatcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353950 |
atatccaacatgagatttcaaggcatgtttcaactagacaacaccagaatgctacttgcatgactctccattgatgattatactcacgaaaaatagatcc |
6353851 |
T |
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| Q |
218 |
cttgaaatgatatatttccctcgttggttctatcgacctctaacataactgtcccttgtacgaaagtattttgtgaatttcatttaaaaggtgtttgtag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
6353850 |
cttgaaatgatatatttccctcgttggttctatcgacctctaacataactgttccttgtacgaaagtattttgtgagtttcatttaaaaagtgtttgtag |
6353751 |
T |
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| Q |
318 |
--nnnnnnnnnataataagaggcgtaggttaacaaaagggcatgaaggaaattacagttataattaacataaactagaaagaaaagagcatcaaatcttt |
415 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6353750 |
tttttttttttataataagaggtgtaggttaacaaaagggcatgaaggaaattacagttataattaacataaaccagaaagaaaagagcatcaaatcttt |
6353651 |
T |
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| Q |
416 |
tttcctaataaatctgcactggagttggtctctctgaaacaatgttgaatggtggc |
471 |
Q |
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| T |
6353650 |
tttcctaataaatctgcacgggagttggtctctctgaaacaatgttgaatggtggc |
6353595 |
T |
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