View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19371_low_6 (Length: 450)
Name: NF19371_low_6
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19371_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 1159426 - 1159735
Alignment:
| Q |
22 |
ttattattttttggttaggaaaatgacatttgctctttgatacacacatagtaaagcaattactactaagtttcaaccaccaacaatgatgatactgata |
121 |
Q |
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| T |
1159426 |
ttattattatttggttaggaaaatgacatttgctctttgatacacacatggtaaagcaattactactaagtttcaaccaccaacaatgatgatactgata |
1159525 |
T |
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| Q |
122 |
tatgtgcagtggagatctcttgcaaatggttttataca------------------ataagtatatctctattt----gtttgttacaactagggtttaa |
199 |
Q |
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| T |
1159526 |
tatgtgcagtggagatctcttgcaaatggttttatacaaaaaatatatatatatatatatatatatatctatttgtttgtttgttacaactagggtttaa |
1159625 |
T |
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| Q |
200 |
ctttactataaaagtgagaaaattgacctcccaagcaagacataggtcatcttattacttgaagatgagataaattatcttctttatttataaattgtag |
299 |
Q |
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| T |
1159626 |
ctttactataaaagtgagaaaattgacctcccaagcaagacat--gtcatcttattacttgaagatgagataaattatcttctttatttataaattgtag |
1159723 |
T |
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| Q |
300 |
gcaatgaatctg |
311 |
Q |
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| T |
1159724 |
gcaatgaatctg |
1159735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 1159799 - 1159853
Alignment:
| Q |
375 |
cgatgattttttggtcaatggtttaaaaatttcaatgagaaaggacaaggtcaca |
429 |
Q |
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| T |
1159799 |
cgatgattttttggtcaatggtttaaatatttcactgagaaagggcaaggtcaca |
1159853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 1163612 - 1163644
Alignment:
| Q |
201 |
tttactataaaagtgagaaaattgacctcccaa |
233 |
Q |
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| T |
1163612 |
tttactataaaagtgaaaaaattgacctcccaa |
1163644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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