View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19371_low_9 (Length: 330)

Name: NF19371_low_9
Description: NF19371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19371_low_9
NF19371_low_9
[»] chr6 (7 HSPs)
chr6 (18-189)||(29364027-29364198)
chr6 (223-312)||(29362782-29362871)
chr6 (263-312)||(24270238-24270287)
chr6 (182-223)||(29362910-29362951)
chr6 (270-312)||(29351713-29351755)
chr6 (89-184)||(29353713-29353809)
chr6 (234-266)||(29915444-29915476)
[»] chr5 (2 HSPs)
chr5 (234-290)||(27753890-27753946)
chr5 (146-211)||(27754121-27754192)
[»] chr7 (1 HSPs)
chr7 (117-182)||(29358638-29358703)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 29364198 - 29364027
Alignment:
Q  18 atgaagtttgagtttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgaagagaaaattaccaagc 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29364198 atgaggtttgagtttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgatgagaaaattaccaagc 29364099  T
Q  118 aattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364098 aattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat 29364027  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 29362871 - 29362782
Alignment:
Q  223 gtggttaatggacaataactctatgttcatgtgcctgcaacatatttatgtatagaatactatgcttttctgtatatttgcagcacattt 312  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29362871 gtggttaatggacaataactctatgttcatgtgcctagaacatatttatgtatagaatactatgcttttctgtatatttgcagcacattt 29362782  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 24270287 - 24270238
Alignment:
Q  263 catatttatgtatagaatactatgcttttctgtatatttgcagcacattt 312  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24270287 catatttatgtatagaatactatgcttttctatatatttgcagcacattt 24270238  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 29362951 - 29362910
Alignment:
Q  182 ttgatgattcagtaataacgaatctcttagttctatgagttg 223  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  29362951 ttgatgattcagtaataacgaatctctaagttctatgagttg 29362910  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 29351755 - 29351713
Alignment:
Q  270 atgtatagaatactatgcttttctgtatatttgcagcacattt 312  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||    
T  29351755 atgtaaagaatactatgtttttctatatatttgcagcacattt 29351713  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 29353809 - 29353713
Alignment:
Q  89 tatgtgtgttgaagagaaaattaccaagcaattgttgagaaagaaagttgattttttc--ggaaataagagagaaaaagttgaattctttttgttttg 184  Q
    |||||||||||| || | ||||||| || | |||||||| |||||||| ||||||||   ||||| | |||||||||||| |||||||||| ||||||    
T  29353809 tatgtgtgttgatgatataattacctagtagttgttgaggaagaaagtcgatttttttttggaaa-aggagagaaaaagtcgaattcttttcgttttg 29353713  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 29915444 - 29915476
Alignment:
Q  234 acaataactctatgttcatgtgcctgcaacata 266  Q
    |||||||||||||||||||||||||| ||||||    
T  29915444 acaataactctatgttcatgtgcctgtaacata 29915476  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 27753946 - 27753890
Alignment:
Q  234 acaataactctatgttcatgtgcctgcaacatatttatgtatagaatactatgcttt 290  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  27753946 acaataactctatgttcatgtgcctacaacatatttatgtatagaatactattcttt 27753890  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 27754192 - 27754121
Alignment:
Q  146 cggaaataagagagaaaaagttgaattctttttgtttt------gatgattcagtaataacgaatctcttag 211  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||| |||||| |||||||||||    
T  27754192 cggaaataagagagaaaaagttgaattctttttgtttttgtttcgatgattcaataataatgaatctcttag 27754121  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 29358638 - 29358703
Alignment:
Q  117 caattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttt 182  Q
    |||||||||||| |||||||| | ||||| ||||| | |||||| |||||||||||||||||||||    
T  29358638 caattgttgagagagaaagtttagttttttggaaaaaggagagagaaagttgaattctttttgttt 29358703  T

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