View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_high_10 (Length: 484)

Name: NF19372_high_10
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_high_10
NF19372_high_10
[»] chr1 (3 HSPs)
chr1 (1-464)||(34576099-34576562)
chr1 (17-86)||(25985824-25985893)
chr1 (17-84)||(18239223-18239290)
[»] chr4 (2 HSPs)
chr4 (17-86)||(53667733-53667802)
chr4 (17-84)||(35421777-35421844)
[»] chr8 (1 HSPs)
chr8 (17-83)||(5197113-5197179)
[»] chr2 (3 HSPs)
chr2 (12-86)||(9676971-9677045)
chr2 (17-84)||(31074476-31074543)
chr2 (17-84)||(35740568-35740634)
[»] chr3 (1 HSPs)
chr3 (17-82)||(12716170-12716235)
[»] chr7 (1 HSPs)
chr7 (17-84)||(5641035-5641102)
[»] chr6 (1 HSPs)
chr6 (17-81)||(10900882-10900946)


Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 34576099 - 34576562
Alignment:
Q  1 gagaaaggaaaggatgtttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagcaggcacattgttgagaag 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34576099 gagaaaggaaaggatgtttgatttgaggaagaagatgggggagaaattggaagagaaaaggcgtcatcttgaagaaaagagcaggcacattgttgagaag 34576198  T
Q  101 atgcgaggaccatgagaaaaaccaagtaaattgaaaaatgctgttcatgatatgttggtcttgtgnnnnnnngcaagttatttagttttatggtatattc 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  34576199 atgcgaggaccatgagaaaaatcaagtaaattgaaaaatgctgttcatgatatgttggtcttgtgaaaaaaagcaagttatttagttttatggtatattc 34576298  T
Q  201 atgtccactcatgtttgaggaatgcttcttttttataattttattatatataagggtttccagtaattcttttgttaacttgccaaatttgacaaaccta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34576299 atgtccactcatgtttgaggaatgcttcttttttataattttattatatataagggtttccagtaattcttttgttaacttgccaaatttgacaaaccta 34576398  T
Q  301 ttgcagaactagttgcacttgcattgatagatctcgcttatgtgacattgttttgtttgtaagacatgatataacaaacatttttagattttctgtttat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34576399 ttgcagaactagttgcacttgcattgatagatctcgcttatgtgacattgttttgtttgtaagacatgatataacaaacatttttagattttctgtttaa 34576498  T
Q  401 tgtcgaacataatgcaggtagaattttaaaatagtgcatttttatatgttgcgatgttactgtt 464  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34576499 tgtcaaacataatgcaagtagaattttaaaatagtgcatttttatatgttgcgatgttactgtt 34576562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 25985893 - 25985824
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagcaggc 86  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  25985893 tttgatttgaggaagaagatgggggagaaattggaagagaaaaggcgtcatattgaagaaaagagcaggc 25985824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 18239223 - 18239290
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagcag 84  Q
    ||||||||| |||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||    
T  18239223 tttgatttggggaagaagatgggggagaaattggaagagaaaaagcgtcatattgaagaaaagagcag 18239290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 53667802 - 53667733
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagcaggc 86  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  53667802 tttgatttgaggaagaagatgggggagaaattggaagagaaaaggcgtcatattgaagaaaagagcaggc 53667733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 35421777 - 35421844
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagcag 84  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||||||    
T  35421777 tttgatttgaggaagaagatggaggagaaattggaagagaaaaggcgtcatattgaagaaaagagcag 35421844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 5197113 - 5197179
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagca 83  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||    
T  5197113 tttgatttgaggaagaagatgggggagaaattggaagagaaaaggcgtcatattgaagaaaagagca 5197179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 9676971 - 9677045
Alignment:
Q  12 ggatgtttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagcaggc 86  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |||||||    
T  9676971 ggatatttgatttgaggaagaagatgggggagaaattggaagagaaaaggcgtcatattgaagaaaaaagcaggc 9677045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 31074543 - 31074476
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagcag 84  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  31074543 tttgttttgaggaagaagatgggggagaaattggaagagaaaaggcgtcatattgaagaaaagagcag 31074476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 35740568 - 35740634
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagcag 84  Q
    |||||||||||||||||| || |||||||||| |||||  |||| |||||| |||||||||| |||||    
T  35740568 tttgatttgaggaagaagatgagggagaaattggaaga-taaagacgtcatattgaagaaaacagcag 35740634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 12716235 - 12716170
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagc 82  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  12716235 tttgatttgaggaagaagatgggggagaaattggaagagaaaaggcgtcatattgaagaaaagagc 12716170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 5641035 - 5641102
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagagcag 84  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  5641035 tttgatttgaggaagaagatgggggagaaattggaagagaaaagacgtcatattgaagaaaagagcag 5641102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 10900946 - 10900882
Alignment:
Q  17 tttgatttgaggaagaaggtgggggagaaattcgaagagaaaaggcgtcatcttgaagaaaagag 81  Q
    |||||||||||||||||| ||||||||||||| |||||||||| || |||| |||||||||||||    
T  10900946 tttgatttgaggaagaagatgggggagaaattggaagagaaaaagcatcatattgaagaaaagag 10900882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University