View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_high_11 (Length: 471)
Name: NF19372_high_11
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 107 - 454
Target Start/End: Complemental strand, 2228410 - 2228068
Alignment:
| Q |
107 |
gagatttgaattacattttaacaacctcgcatctgcatcccaccccaacgaaatgacattgttcaaacaacagattgattgtctaactccataaaggatg |
206 |
Q |
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| T |
2228410 |
gagatttgaattacattttaacaacctcgcatatgcatcccaccccaacgaaatgacattgttcaaacaacagattgattgtctaactccataaaggatg |
2228311 |
T |
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| Q |
207 |
cctattacttatgatcatgttttcaatttttcagtcatttgttcttatgagatttcaagccatattctccnnnnnnncgatcacactaattgaattgttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
2228310 |
cctattacttatgatcatgttttcaatttttcagtcatttgttcttatgagatttcaagccatattctcctttttttcgatcacac-aattgaattgttt |
2228212 |
T |
|
| Q |
307 |
gtcttttacttcttcctattctatttcgacatatatatcaaaataagttttttcctaactaatcagtcgtcaaatatagtttttctttgaagaaacgtca |
406 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2228211 |
gtcttttacttcttcctattctattttgacatatatatcaaaataagttttttc----ctaatcagtcgtcaaatatagtttttctttgaagaaacgtca |
2228116 |
T |
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| Q |
407 |
caaagacaacatcaaaaaatcaaaacaattgttttcacccttacaagt |
454 |
Q |
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| T |
2228115 |
caaagacaacatcaaaaaatcaaaacaattgttttcacccttacaagt |
2228068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 24991285 - 24991321
Alignment:
| Q |
386 |
tttttctttgaagaaacgtcacaaagacaacatcaaa |
422 |
Q |
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| T |
24991285 |
tttttctttgaagaattgtcacaaagacaacatcaaa |
24991321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 25518724 - 25518761
Alignment:
| Q |
19 |
gtaacagacttagctaaaaactaggaaatagttagtta |
56 |
Q |
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|||||| |||||||||||||| |||||||||||||||| |
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| T |
25518724 |
gtaacaaacttagctaaaaacaaggaaatagttagtta |
25518761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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