View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_high_16 (Length: 403)
Name: NF19372_high_16
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 54218656 - 54218271
Alignment:
| Q |
1 |
tgtcttgatcaattacaagcataaatataactaatctgaaatgtggtgctacaaaattatgaatgcattaacttaggctagtatgctaatttctagtaga |
100 |
Q |
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| T |
54218656 |
tgtcttgatcaattacaagcataaatataactaatctgaaatgtggtgctacaaaattatgaatgcattaacttaggctagtatgctaatttctagtaga |
54218557 |
T |
|
| Q |
101 |
caaactccgttgaacccaagctgtatcaacgtgtaattatttacagttacacacattcgttcaattttcaatttaatgaaatgcaaacagttgacatggc |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54218556 |
caaactccgttgaacccaagctgtatcaacgggtaattatttacagttacacacattcgttcaattttcaatttaatgaaatgcaaacaattgacatggc |
54218457 |
T |
|
| Q |
201 |
ctgcattactgctac-ttgattcattctacgaccactagagtggcttcagataaatagagagttgtctttgcaagcaacaaaaggcacatccgtgaaaaa |
299 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218456 |
ctgcattactgctactttgattcattctacgaccactagagtggcttcagataaatagagagttgtctttgcaagcaacaaaaggcacatccgtgaaaaa |
54218357 |
T |
|
| Q |
300 |
taatcactcaaacgcaagtactatttataaagtgtgaattacggtccacttaggaggtcatggttatcatagtggtcattacgatc |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54218356 |
taatcactcaaacgcaagtactatttataaagtgtgaattacggtccacttaggaggtcatggttatcatagtgatcattacgatc |
54218271 |
T |
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