View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_high_24 (Length: 301)
Name: NF19372_high_24
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_high_24 |
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| [»] scaffold0474 (2 HSPs) |
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Alignment Details
Target: scaffold0474 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8761 - 8568
Alignment:
| Q |
1 |
atatcaaaactaaggtctttggagatccttgacttgtctcggatcatcttgaactcacggcctctaggcttgttgtcatctcatttgataatttcaggtc |
100 |
Q |
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||||||||||| || ||| ||||||||||||| |||| | ||| || ||||||| | |||| ||||| |||||| | ||||||||||||||| |||| |
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| T |
8761 |
atatcaaaactcagatctctggagatccttgaattgtttgggaacaatttgaacttatggcccctaggtttgttgattt-tcatttgataatttctggtc |
8663 |
T |
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| Q |
101 |
tctgatattcctagt---gaatacttataatgacatgttctcaattttttatatatcagagaatcaaggatttggatatgcatggccgtccagtt |
192 |
Q |
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| T |
8662 |
tctgatattcctagtactgaatacatataatgacatgtactcaattttttttatatcagaaaatcatgggtttggatttgcatggccatccagtt |
8568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0474; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 8539 - 8446
Alignment:
| Q |
194 |
tttgagtaactatattctttcatccctaaatggtcttccacatctcaaatctcttgacttaagttacaacaacttgaaaggatctcttgatatt |
287 |
Q |
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| T |
8539 |
tttgagtaacagcattctttcatacctaaataatcttccacatctgaaatctcttgacttaagtgccaacaacttgaaaggatcacttgatatt |
8446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 24260057 - 24259981
Alignment:
| Q |
211 |
tttcatccctaaatggtcttccacatctcaaatctcttgacttaagttacaacaacttgaaaggatctcttgatatt |
287 |
Q |
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| T |
24260057 |
tttcatccctaaatggtcttccacgtctcaaatctcttgacttaagttacaacaacttgaatggatcgcttgatatt |
24259981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 24260480 - 24260285
Alignment:
| Q |
1 |
atatcaaaactaaggtctttggagatccttgacttgtctcggatcatcttgaactcacggcctctaggcttgttgtcatctcatttgataatttcaggtc |
100 |
Q |
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||||||||||| ||||||||||||||||||||||| ||| | || |||||| | || | ||||| |||||||||||||||||||||||||| |||| |
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| T |
24260480 |
atatcaaaactgaggtctttggagatccttgacttatcttcaaacaatatgaacttatggaccctaggtttgttgtcatctcatttgataatttctggtc |
24260381 |
T |
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| Q |
101 |
tctga------tattcctagtgaatacttataatgacatgttctcaattttttatatatcagagaatcaaggatttggatatgcatggccgtccagtt |
192 |
Q |
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| T |
24260380 |
tctaagctccttattcctagtgactacagataatgacattttctcaatttt--atttatcagagaatcatggatttgaatttgcatggccctccagtt |
24260285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24260121 - 24260087
Alignment:
| Q |
1 |
atatcaaaactaaggtctttggagatccttgactt |
35 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
24260121 |
atatcaaaactgaggtctttggagatccttgactt |
24260087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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