View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_high_40 (Length: 220)

Name: NF19372_high_40
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_high_40
NF19372_high_40
[»] chr5 (16 HSPs)
chr5 (53-187)||(10241849-10241984)
chr5 (1-52)||(17545151-17545202)
chr5 (1-52)||(32423605-32423656)
chr5 (1-49)||(17175033-17175081)
chr5 (1-52)||(10241765-10241816)
chr5 (1-52)||(11188661-11188712)
chr5 (1-52)||(13958422-13958473)
chr5 (6-53)||(34824440-34824487)
chr5 (1-40)||(41930145-41930184)
chr5 (1-49)||(2328632-2328680)
chr5 (1-49)||(6518758-6518806)
chr5 (1-49)||(7171768-7171816)
chr5 (1-49)||(11786042-11786090)
chr5 (1-49)||(18638638-18638686)
chr5 (1-49)||(20707769-20707817)
chr5 (1-49)||(25729422-25729470)
[»] chr6 (13 HSPs)
chr6 (1-52)||(3795753-3795804)
chr6 (1-52)||(6210094-6210145)
chr6 (1-52)||(9435666-9435717)
chr6 (1-52)||(10913058-10913109)
chr6 (1-54)||(7177335-7177388)
chr6 (1-37)||(4408398-4408434)
chr6 (1-52)||(3640554-3640605)
chr6 (1-52)||(15963922-15963973)
chr6 (5-52)||(30885549-30885596)
chr6 (1-52)||(34432776-34432827)
chr6 (1-39)||(28842695-28842733)
chr6 (1-49)||(216246-216294)
chr6 (1-49)||(24319053-24319101)
[»] chr2 (22 HSPs)
chr2 (1-52)||(1501001-1501052)
chr2 (1-52)||(31223660-31223711)
chr2 (1-52)||(34355761-34355812)
chr2 (1-37)||(38179239-38179275)
chr2 (1-37)||(38387703-38387739)
chr2 (1-52)||(2950341-2950392)
chr2 (1-52)||(44822463-44822514)
chr2 (1-52)||(44857213-44857264)
chr2 (1-39)||(34018090-34018128)
chr2 (1-39)||(42541192-42541230)
chr2 (1-46)||(14518324-14518369)
chr2 (7-52)||(29772257-29772302)
chr2 (1-49)||(1309108-1309156)
chr2 (1-49)||(1844857-1844905)
chr2 (1-49)||(11050739-11050787)
chr2 (1-49)||(19281648-19281696)
chr2 (1-49)||(27297215-27297263)
chr2 (1-49)||(29449488-29449536)
chr2 (1-49)||(33262482-33262530)
chr2 (1-49)||(36005482-36005530)
chr2 (1-49)||(40473532-40473580)
chr2 (1-49)||(40535431-40535479)
[»] chr3 (24 HSPs)
chr3 (1-53)||(25938908-25938960)
chr3 (1-52)||(22501910-22501961)
chr3 (1-52)||(6488164-6488215)
chr3 (1-52)||(13638224-13638275)
chr3 (1-52)||(39966053-39966104)
chr3 (1-52)||(53347269-53347320)
chr3 (1-49)||(29373431-29373479)
chr3 (1-49)||(42920629-42920677)
chr3 (5-49)||(44626079-44626123)
chr3 (1-49)||(47098772-47098820)
chr3 (1-49)||(48739726-48739774)
chr3 (1-52)||(4541938-4541988)
chr3 (1-52)||(19999907-19999958)
chr3 (1-34)||(2368976-2369009)
chr3 (3-40)||(46247299-46247336)
chr3 (1-49)||(4860201-4860249)
chr3 (1-37)||(28951756-28951792)
chr3 (1-49)||(33225330-33225378)
chr3 (3-39)||(33528225-33528261)
chr3 (1-49)||(34898749-34898797)
chr3 (1-49)||(37488442-37488490)
chr3 (1-49)||(40910162-40910210)
chr3 (1-49)||(45198763-45198811)
chr3 (1-49)||(51155074-51155122)
[»] chr4 (19 HSPs)
chr4 (1-52)||(25235776-25235827)
chr4 (1-52)||(48569155-48569206)
chr4 (1-50)||(5801995-5802044)
chr4 (1-52)||(3763987-3764038)
chr4 (1-40)||(542805-542844)
chr4 (5-52)||(4590290-4590337)
chr4 (1-40)||(6170960-6170999)
chr4 (15-54)||(20945116-20945155)
chr4 (1-52)||(45126172-45126223)
chr4 (1-52)||(47934051-47934102)
chr4 (11-53)||(16193149-16193191)
chr4 (1-39)||(22819448-22819486)
chr4 (1-49)||(17616962-17617010)
chr4 (1-49)||(18360533-18360581)
chr4 (1-49)||(23778807-23778855)
chr4 (1-49)||(29329805-29329853)
chr4 (1-49)||(36602348-36602396)
chr4 (1-49)||(45112093-45112141)
chr4 (1-49)||(47890735-47890783)
[»] chr1 (17 HSPs)
chr1 (1-52)||(18467177-18467228)
chr1 (1-52)||(45333691-45333742)
chr1 (1-52)||(7166206-7166257)
chr1 (1-52)||(11215041-11215092)
chr1 (1-52)||(19011395-19011446)
chr1 (1-49)||(34656377-34656425)
chr1 (1-49)||(48638572-48638620)
chr1 (1-52)||(3560360-3560411)
chr1 (1-52)||(6463015-6463066)
chr1 (1-52)||(13538425-13538476)
chr1 (1-52)||(22563426-22563477)
chr1 (1-52)||(40520870-40520921)
chr1 (1-40)||(47088849-47088888)
chr1 (1-52)||(51050230-51050281)
chr1 (1-49)||(25999890-25999938)
chr1 (1-49)||(28564327-28564375)
chr1 (1-49)||(46965780-46965828)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-52)||(46566-46617)
[»] chr8 (24 HSPs)
chr8 (1-52)||(16449165-16449216)
chr8 (1-52)||(26022287-26022338)
chr8 (1-52)||(42035376-42035427)
chr8 (1-49)||(8969135-8969183)
chr8 (3-39)||(30466718-30466754)
chr8 (1-49)||(38344089-38344137)
chr8 (1-52)||(2792819-2792870)
chr8 (1-52)||(16432107-16432158)
chr8 (1-40)||(41458335-41458374)
chr8 (1-52)||(43856361-43856412)
chr8 (1-39)||(39432348-39432386)
chr8 (3-39)||(1032609-1032645)
chr8 (1-49)||(7816443-7816491)
chr8 (1-49)||(10200663-10200711)
chr8 (17-49)||(11296975-11297007)
chr8 (1-49)||(11875926-11875974)
chr8 (1-49)||(11890933-11890981)
chr8 (1-49)||(24480803-24480851)
chr8 (1-49)||(34266052-34266100)
chr8 (1-49)||(36540327-36540375)
chr8 (1-49)||(37669726-37669774)
chr8 (1-49)||(38107456-38107504)
chr8 (1-49)||(43085205-43085253)
chr8 (1-49)||(44444584-44444632)
[»] chr7 (20 HSPs)
chr7 (1-52)||(14204312-14204363)
chr7 (1-52)||(15238929-15238980)
chr7 (1-52)||(25833595-25833646)
chr7 (1-52)||(47641085-47641136)
chr7 (1-49)||(30388489-30388537)
chr7 (1-49)||(32074377-32074425)
chr7 (1-49)||(32750056-32750104)
chr7 (1-49)||(35835681-35835729)
chr7 (1-49)||(48447789-48447837)
chr7 (1-32)||(6973493-6973524)
chr7 (1-52)||(32856896-32856947)
chr7 (1-52)||(38889472-38889523)
chr7 (1-52)||(48719839-48719890)
chr7 (2-52)||(36469684-36469734)
chr7 (1-46)||(23754999-23755044)
chr7 (3-39)||(12166121-12166157)
chr7 (1-49)||(12640571-12640619)
chr7 (1-49)||(42548010-42548058)
chr7 (1-49)||(47463971-47464019)
chr7 (1-49)||(48674544-48674592)
[»] scaffold0112 (1 HSPs)
scaffold0112 (1-39)||(17951-17989)
[»] scaffold1787 (1 HSPs)
scaffold1787 (1-40)||(440-479)
[»] scaffold0128 (1 HSPs)
scaffold0128 (1-49)||(17660-17708)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 10241849 - 10241984
Alignment:
Q  53 cacaatacagtggc-gtggatcgtcaacaatgttttaaataatttttaagaatcaattaacctttgtnnnnnnnnnntcaattaacctaattgtaaacta 151  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| |||||||||||||||||||    
T  10241849 cacaatacagtggttgtggatcgtcaacaatgttttaaataatttttaagaatcaattaacctttgtaaaaaaaaaatcatttaacctaattgtaaacta 10241948  T
Q  152 tacaggactcttctccaacttagcaattactctaat 187  Q
    |||| ||||||||||||| |||||||||||||||||    
T  10241949 tacatgactcttctccaagttagcaattactctaat 10241984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17545202 - 17545151
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| | ||||||||||||| |||||||||||    
T  17545202 tatgcaggggccggggttcgaaccccggacactccacttctccataatttaa 17545151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32423605 - 32423656
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||| |||||||    
T  32423605 tatgcaggggctggggttcaaaccccagacactccacttctccacaatttaa 32423656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17175081 - 17175033
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||| ||||    
T  17175081 tatgcaggggccggggttcgaacctcggacactccacttctccacaatt 17175033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10241765 - 10241816
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||| |||||||| |||| ||||||||||||||| ||| |||||||    
T  10241765 tatgcaggggttggggttcaaaccccagacactccacttctccagaatttaa 10241816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11188712 - 11188661
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||||||||||| |||| ||||||||| ||||| ||| |||||||    
T  11188712 tatgcaggggctggggttcaaaccccagacactcaacttctccacaatttaa 11188661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13958422 - 13958473
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||  |||||||||||| | ||||||||||||| |||||||||||    
T  13958422 tatgcaggggacggggttcgaaccccggacactccacttctccataatttaa 13958473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 34824487 - 34824440
Alignment:
Q  6 aggggctggggttcgaacctcagacactccacttccccataatttaac 53  Q
    |||||| |||||||||| ||| ||||||||||||| ||||||||||||    
T  34824487 aggggccggggttcgaatctcggacactccacttctccataatttaac 34824440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41930145 - 41930184
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttc 40  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  41930145 tatgcaggggctggggttcgaaccccagacaccccacttc 41930184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2328632 - 2328680
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| || |||||||||||| ||||||||||||||| ||| ||||    
T  2328632 tatgcaggagccggggttcgaaccccagacactccacttctccacaatt 2328680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6518806 - 6518758
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| ||||||||||||||| | ||||||||||||| ||| ||||    
T  6518806 tatgcaggagctggggttcgaaccccggacactccacttctccacaatt 6518758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7171768 - 7171816
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| ||||||| ||||||| ||| ||||    
T  7171768 tatgcaggggccggggttcgaaccccagacaccccacttctccacaatt 7171816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11786090 - 11786042
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||||| |||||||||| || |||||||||||| ||| ||||    
T  11786090 tatgcaggggctgaggttcgaaccccacacactccacttctccacaatt 11786042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18638638 - 18638686
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| ||||    
T  18638638 tatgcaggggccggggttcgaaccccggacactccacttctccacaatt 18638686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20707817 - 20707769
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||| ||||||||||||| |||||||| |||||| ||| ||||    
T  20707817 tatgcaggggttggggttcgaaccccagacacttcacttctccacaatt 20707769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25729470 - 25729422
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||  |||||||||||| ||||||||||||||| ||| ||||    
T  25729470 tatgcaggggtcggggttcgaaccccagacactccacttctccacaatt 25729422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3795804 - 3795753
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  3795804 tatgcaggggctggggttcgaacctcagacactccacttctccacaatttaa 3795753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6210094 - 6210145
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  6210094 tatgcaggggctggggttcgaaccccagacactccacttctccacaatttaa 6210145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9435666 - 9435717
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| | ||||||||||||| ||| |||||||    
T  9435666 tatgcaggggctggggttcgaaccccggacactccacttctccacaatttaa 9435717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10913109 - 10913058
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||  |||||||||||| ||||||||||||||| |||||||||||    
T  10913109 tatgcaggggtcggggttcgaaccccagacactccacttctccataatttaa 10913058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7177335 - 7177388
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaaca 54  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||| |||| ||||    
T  7177335 tatgcaggggctggggttcgaaccccagacaccccacttctccacaattaaaca 7177388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4408398 - 4408434
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4408398 tatgcaggggctggggttcgaaccacagacactccac 4408434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3640554 - 3640605
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||| |||| |||||||||||||| ||||||||||||| ||| |||||||    
T  3640554 tatgcaagggccggggttcgaacctcggacactccacttctccacaatttaa 3640605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15963973 - 15963922
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||||||||||||||||   ||||||||||||| ||| |||||||    
T  15963973 tatgcaggggctggggttcgaaccctggacactccacttctccacaatttaa 15963922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 30885596 - 30885549
Alignment:
Q  5 caggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||| ||||||||||| ||| ||| |||||||    
T  30885596 caggggctggggttcgaaccccagacactccatttctccacaatttaa 30885549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34432827 - 34432776
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||| || ||||||||||||| ||||||||||||||| ||| |||||||    
T  34432827 tatgcagaggttggggttcgaaccccagacactccacttctccacaatttaa 34432776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28842695 - 28842733
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  28842695 tatgcaggggctggggttggaaccccagacactccactt 28842733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 216246 - 216294
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||| |||||||||||||||| ||||| ||||||| ||| ||||    
T  216246 tatgcagggtctggggttcgaacctcggacaccccacttctccacaatt 216294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24319053 - 24319101
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| ||||    
T  24319053 tatgcaggggccggggttcgaaccccggacactccacttctccacaatt 24319101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1501001 - 1501052
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  1501001 tatgcaggggctggggttcgaaccccagacactccacttctccataatttaa 1501052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31223660 - 31223711
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  31223660 tatgcaggggctggggtttgaaccccagacactccacttctccacaatttaa 31223711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34355761 - 34355812
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||| |||||||    
T  34355761 tatgcaggggccggggttcgaaccccagacactccacttctccacaatttaa 34355812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38179275 - 38179239
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccac 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  38179275 tatgcaggggctggggttcgaacctcggacactccac 38179239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38387703 - 38387739
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  38387703 tatgcaggggctggggttcgaaccccagacactccac 38387739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2950392 - 2950341
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||| ||||||||||| ||| ||||||||| ||| |||||||||||    
T  2950392 tatgcaggggttggggttcgaatctcggacactccatttctccataatttaa 2950341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44822463 - 44822514
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||| || |||||||||||| ||||||||||||||| ||| |||||||    
T  44822463 tatgcaggagccggggttcgaaccccagacactccacttctccacaatttaa 44822514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44857264 - 44857213
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| | |||||||||| | ||||||||||||| |||||||||||    
T  44857264 tatgcaggggccgaggttcgaaccccggacactccacttctccataatttaa 44857213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34018128 - 34018090
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  34018128 tatgcaggggctggggttcgaacctcggacaccccactt 34018090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42541192 - 42541230
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  42541192 tatgcaggggctggggttcgaaccccagacaccccactt 42541230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14518324 - 14518369
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccata 46  Q
    ||||||||||| ||||||||||||||  |||||||||||| |||||    
T  14518324 tatgcaggggccggggttcgaacctcgaacactccacttctccata 14518369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 29772302 - 29772257
Alignment:
Q  7 ggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||| ||||||||||| ||| ||| |||||||    
T  29772302 ggggctggggttcgaaccccagacactccaattctccacaatttaa 29772257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1309156 - 1309108
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| ||||||||||||||| | ||||||||||||| ||| ||||    
T  1309156 tatgcaggagctggggttcgaaccccggacactccacttctccacaatt 1309108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1844857 - 1844905
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||||| ||||| ||||||| ||| ||||    
T  1844857 tatgcaggggccggggttcgaacctcggacaccccacttctccacaatt 1844905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11050787 - 11050739
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||||||||||||||||  | ||||| ||||||| ||||||||    
T  11050787 tatgcaggggctggggttcgaactccggacaccccacttctccataatt 11050739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19281648 - 19281696
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| ||||||||||||||| | ||||||||||||| ||| ||||    
T  19281648 tatgcaggagctggggttcgaaccccggacactccacttctccacaatt 19281696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27297215 - 27297263
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| |||||| |||||||| | ||||||||||||| ||||||||    
T  27297215 tatgcaggagctgggattcgaaccccggacactccacttctccataatt 27297263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29449488 - 29449536
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| ||||||||| ||||| ||| ||||    
T  29449488 tatgcaggggccggggttcgaaccccagacactctacttctccacaatt 29449536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33262482 - 33262530
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||  |||||||||||||| ||||||||||||| ||| ||||    
T  33262482 tatgcaggggtcggggttcgaacctcggacactccacttctccacaatt 33262530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36005482 - 36005530
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| || |||||||||||| ||||||||||||||| ||| ||||    
T  36005482 tatgcaggagccggggttcgaaccccagacactccacttctccacaatt 36005530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40473580 - 40473532
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||||||||||| ||||||| ||||| ||||||| ||| ||||    
T  40473580 tatgcaggggctggggtttgaacctcggacaccccacttctccacaatt 40473532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40535479 - 40535431
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| ||||    
T  40535479 tatgcaggggccggggttcgaaccccggacactccacttctccacaatt 40535431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25938960 - 25938908
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaac 53  Q
    |||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  25938960 tatgcaggggctggggttcgaaccccacacactccacttctccataatttaac 25938908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22501961 - 22501910
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  22501961 tatgcaggggctggggttcgaaccccagacactccacttctccacaatttaa 22501910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6488164 - 6488215
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||| ||||||||||| ||||||||||||||| ||| |||||||    
T  6488164 tatgcaggggctagggttcgaaccccagacactccacttctccacaatttaa 6488215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13638275 - 13638224
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  13638275 tatgtaggggctggggttcgaaccccagacactccacttctccacaatttaa 13638224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39966104 - 39966053
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||| || |||||||||||||||||||||||||| ||| |||||||    
T  39966104 tatgcaggggttgaggttcgaacctcagacactccacttctccacaatttaa 39966053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 53347320 - 53347269
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||| |||||||    
T  53347320 tatgcagggactggggttcgaaccccagacactccacttctccacaatttaa 53347269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29373479 - 29373431
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||||||||||| ||||||| ||| ||||    
T  29373479 tatgcaggggccggggttcgaacctcagacaccccacttctccacaatt 29373431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42920677 - 42920629
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||| ||||    
T  42920677 tatgcaggggttggggttcgaaccccagacactccacttctccacaatt 42920629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 44626079 - 44626123
Alignment:
Q  5 caggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||    
T  44626079 caggggctgggattcgaacctcagacactccacttctccacaatt 44626123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47098772 - 47098820
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||| ||||    
T  47098772 tatgcaggggccggggttcgaaccccagacactccacttctccacaatt 47098820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48739774 - 48739726
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||| ||||    
T  48739774 tatgcaggggctggggttcgaaccccagacaccccacttctccacaatt 48739726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4541938 - 4541988
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||| |||||||    
T  4541938 tatgcaggggctggggttcg-accccagacactccacttctccacaatttaa 4541988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19999907 - 19999958
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||| | ||| ||| |||||||    
T  19999907 tatgcaggggctggggttcgaaccccagacactctagttctccacaatttaa 19999958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2368976 - 2369009
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  2368976 tatgcaggggctggggttcgaaccccagacactc 2369009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 46247299 - 46247336
Alignment:
Q  3 tgcaggggctggggttcgaacctcagacactccacttc 40  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  46247299 tgcaggggctggggttcgaaccccagacaccccacttc 46247336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4860201 - 4860249
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||||| |||||||||| ||||||| ||||||| ||| ||||    
T  4860201 tatgcaggggctgaggttcgaaccccagacaccccacttctccacaatt 4860249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28951756 - 28951792
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccac 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  28951756 tatgcaggggctggggttcgaaccccagacaccccac 28951792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33225378 - 33225330
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| || |||||||||||| ||||||||||||||| ||| ||||    
T  33225378 tatgcaggagccggggttcgaaccccagacactccacttctccacaatt 33225330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 33528261 - 33528225
Alignment:
Q  3 tgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  33528261 tgcaggggctggggttcgaaccccagacaccccactt 33528225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34898797 - 34898749
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||||| |||||||||| ||||||| ||||||| ||| ||||    
T  34898797 tatgcaggggctgaggttcgaaccccagacaccccacttctccacaatt 34898749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37488490 - 37488442
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| ||||    
T  37488490 tatgcaggggccggggttcgaaccccggacactccacttctccacaatt 37488442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40910210 - 40910162
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||||| ||| |||||| ||||||||||||||| ||| ||||    
T  40910210 tatgcaggggctgaggtccgaaccccagacactccacttctccacaatt 40910162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45198763 - 45198811
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||| |||||||| |||||||||||||||||||| ||||| ||| ||||    
T  45198763 tatgtaggggctgaggttcgaacctcagacactctacttctccacaatt 45198811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 51155122 - 51155074
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||| ||||||||||||||||||||| ||||| ||||||| ||| ||||    
T  51155122 tatgtaggggctggggttcgaacctccgacaccccacttctccacaatt 51155074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25235827 - 25235776
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  25235827 tatgcaggggctggggttcgaaccccagacactccacttctccacaatttaa 25235776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 48569206 - 48569155
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  48569206 tatgcaggggctggggttcgaaccccagacactccacttctccacaatttaa 48569155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5801995 - 5802044
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataattt 50  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  5801995 tatgcaggggctggggttcgaacctcacacactccacttctccacaattt 5802044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3764038 - 3763987
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| |||| |||||||||| ||| |||||||    
T  3764038 tatgcaggggctggggttcgaaccccagatactccacttctccacaatttaa 3763987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 542844 - 542805
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttc 40  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  542844 tatgcaggggctggggttcgaacttcggacactccacttc 542805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 4590290 - 4590337
Alignment:
Q  5 caggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||| |||||||||| ||||||||||||||| ||| |||||||    
T  4590290 caggggctgaggttcgaaccccagacactccacttctccacaatttaa 4590337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6170999 - 6170960
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttc 40  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  6170999 tatgtaggggctggggttcgaacctcagacactctacttc 6170960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 20945155 - 20945116
Alignment:
Q  15 ggttcgaacctcagacactccacttccccataatttaaca 54  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  20945155 ggttcgaacctcagacactccacttctccacaatttaaca 20945116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 45126172 - 45126223
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||| |||| |||||||||| ||||||||||||||| ||| |||||||    
T  45126172 tatgcaggagctgaggttcgaaccccagacactccacttctccacaatttaa 45126223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 47934102 - 47934051
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| |||||||    
T  47934102 tatgcaggggccggggttcgaaccccggacactccacttctccacaatttaa 47934051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 16193191 - 16193149
Alignment:
Q  11 ctggggttcgaacctcagacactccacttccccataatttaac 53  Q
    ||||||||| || ||||||||||||||||| ||||||||||||    
T  16193191 ctggggttcaaatctcagacactccacttctccataatttaac 16193149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22819448 - 22819486
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  22819448 tatgcaggagctggggttcgaaccccagacactccactt 22819486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17617010 - 17616962
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| ||||    
T  17617010 tatgcaggggccggggttcgaaccccggacactccacttctccacaatt 17616962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18360533 - 18360581
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| ||||    
T  18360533 tatgcaggggccggggttcgaaccccggacactccacttctccacaatt 18360581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23778855 - 23778807
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||| ||||||||||||| ||||||| ||||||| ||| ||||    
T  23778855 tatgcaggggttggggttcgaaccccagacaccccacttctccacaatt 23778807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29329853 - 29329805
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||| |||||| |||||||||||| ||||||||||||||| ||| ||||    
T  29329853 tatgtaggggccggggttcgaaccccagacactccacttctccacaatt 29329805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36602396 - 36602348
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| ||||    
T  36602396 tatgcaggggccggggttcgaaccccggacactccacttctccacaatt 36602348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45112141 - 45112093
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| || |||||||||||| | ||||||||||||| ||||||||    
T  45112141 tatgcaggagccggggttcgaaccccggacactccacttctccataatt 45112093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47890735 - 47890783
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||  |||||||||||| ||||||||||||||| ||| ||||    
T  47890735 tatgcaggggtcggggttcgaaccccagacactccacttctccacaatt 47890783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18467228 - 18467177
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  18467228 tatgcaggggctggggttcgaaccccagacactccacttctccacaatttaa 18467177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45333742 - 45333691
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  45333742 tatgcaggggctggggttcgaaccccagacactccacttctccacaatttaa 45333691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7166257 - 7166206
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| | ||||||||||||| ||| |||||||    
T  7166257 tatgcaggggctggggttcgaaccccggacactccacttctccacaatttaa 7166206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11215041 - 11215092
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||| |||||||    
T  11215041 tatgcaggggctgaggttcgaaccccagacactccacttctccacaatttaa 11215092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19011395 - 19011446
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| |||| |||||||||| ||| |||||||    
T  19011395 tatgcaggggctggggttcgaaccccagatactccacttctccacaatttaa 19011446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34656425 - 34656377
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||| ||||    
T  34656425 tatgcaggggttggggttcgaacctcggacactccacttctccacaatt 34656377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 48638572 - 48638620
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||| ||||    
T  48638572 tatgcaggggctggggttcgaaccccagacaccccacttctccacaatt 48638620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3560411 - 3560360
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||| ||||||||| |||| |||||||||| ||| |||||||    
T  3560411 tatgcaggggctggagttcgaaccccagatactccacttctccacaatttaa 3560360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6463066 - 6463015
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| |||||||    
T  6463066 tatgcaggggccggggttcgaaccccggacactccacttctccacaatttaa 6463015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13538476 - 13538425
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| |||||||    
T  13538476 tatgcaggggccggggttcgaaccccggacactccacttctccacaatttaa 13538425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22563426 - 22563477
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| |||||||    
T  22563426 tatgcaggggccggggttcgaaccccggacactccacttctccacaatttaa 22563477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40520870 - 40520921
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||| ||||||||||||||||| |||||||||||| || ||| |||||||    
T  40520870 tatgcatgggctggggttcgaaccccagacactccacctctccacaatttaa 40520921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47088849 - 47088888
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttc 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  47088849 tatgcaggggctggggttcgaaccccggacactccacttc 47088888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 51050230 - 51050281
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||| ||||||||||||| |||||| |||||||| ||| |||||||    
T  51050230 tatgcaggggatggggttcgaaccccagacattccacttctccacaatttaa 51050281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25999890 - 25999938
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| ||||||||||||||| | ||||||||||||| ||| ||||    
T  25999890 tatgcaggagctggggttcgaaccccggacactccacttctccacaatt 25999938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28564375 - 28564327
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||| ||||||||||||||| ||||| ||||||| ||| ||||    
T  28564375 tatgcaggggttggggttcgaacctcggacaccccacttctccacaatt 28564327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46965780 - 46965828
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| || |||||||||||| | ||||||||||||| ||||||||    
T  46965780 tatgcaggagccggggttcgaaccccggacactccacttctccataatt 46965828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 46566 - 46617
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||||||| | ||| |||||||    
T  46566 tatgcaggggctggggttcgaaccccagacactccactgctccacaatttaa 46617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16449165 - 16449216
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||| |||||||    
T  16449165 tatgcaggggttggggttcgaaccccagacactccacttctccacaatttaa 16449216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26022287 - 26022338
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||| |||||||    
T  26022287 tatgcaggggccggggttcgaaccccagacactccacttctccacaatttaa 26022338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42035376 - 42035427
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||| |||||||    
T  42035376 tatgcaggggctggggttcgaaccccagacactctacttctccacaatttaa 42035427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8969135 - 8969183
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  8969135 tatgcaggagctggggttcgaacctcggacactccacttctccacaatt 8969183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 30466718 - 30466754
Alignment:
Q  3 tgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30466718 tgcaggggctggggttcgaacctcagacaccccactt 30466754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38344089 - 38344137
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||| ||||    
T  38344089 tatgcaggagctggggttcgaaccccagacactccacttctccacaatt 38344137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2792819 - 2792870
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| |||||||    
T  2792819 tatgcaggggccggggttcgaaccccggacactccacttctccacaatttaa 2792870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16432158 - 16432107
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||| || ||||||||||| || ||||||||||||| |||||||||||    
T  16432158 tatgcaggagccggggttcgaacatcggacactccacttctccataatttaa 16432107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41458335 - 41458374
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttc 40  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  41458335 tatgcaggggctgggtttcgaacctcggacactccacttc 41458374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43856412 - 43856361
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| |||||||    
T  43856412 tatgcaggggccggggttcgaaccccggacactccacttctccacaatttaa 43856361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39432386 - 39432348
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  39432386 tatgcaggggttggggttcgaacctcagacaccccactt 39432348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 1032609 - 1032645
Alignment:
Q  3 tgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  1032609 tgcaggggctggggttcgaaccccagacaccccactt 1032645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7816443 - 7816491
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| || |||||||||||||| ||||||||||||| ||| ||||    
T  7816443 tatgcaggagccggggttcgaacctcggacactccacttctccacaatt 7816491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10200711 - 10200663
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| || |||||||||||| | ||||||||||||| ||||||||    
T  10200711 tatgcaggagccggggttcgaaccccggacactccacttctccataatt 10200663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 11297007 - 11296975
Alignment:
Q  17 ttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||||||||||||||||||||| ||||    
T  11297007 ttcgaacctcagacactccacttccccacaatt 11296975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11875926 - 11875974
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| ||||||||||||||| | ||||||||||||| ||| ||||    
T  11875926 tatgcaggagctggggttcgaaccccggacactccacttctccacaatt 11875974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11890933 - 11890981
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| ||||||||||||||| | ||||||||||||| ||| ||||    
T  11890933 tatgcaggagctggggttcgaaccccggacactccacttctccacaatt 11890981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24480851 - 24480803
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||||||||||||||||||  ||||| ||||||| ||| ||||    
T  24480851 tatgcaggggctggggttcgaaccttggacaccccacttctccacaatt 24480803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34266052 - 34266100
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| | ||||||||||||||| ||||||||||||| ||| ||||    
T  34266052 tatgcaggagttggggttcgaacctcggacactccacttctccacaatt 34266100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36540327 - 36540375
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||  |||||||||||| || |||||||||||| ||||||||    
T  36540327 tatgcaggggtcggggttcgaaccccaaacactccacttctccataatt 36540375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37669726 - 37669774
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||| |||||| ||||||||| ||||||||||||||| ||| ||||    
T  37669726 tatgcagtggctggagttcgaaccccagacactccacttctccacaatt 37669774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38107504 - 38107456
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| ||||||| ||||||| ||| ||||    
T  38107504 tatgcaggggccggggttcgaaccccagacaccccacttctccacaatt 38107456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43085253 - 43085205
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||| ||||    
T  43085253 tatgcaggggccggggttcgaaccccggacactccacttctccacaatt 43085205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44444584 - 44444632
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||||||||||||||||| | ||||| ||||||| ||| ||||    
T  44444584 tatgcaggggctggggttcgaaccccggacaccccacttctccacaatt 44444632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14204312 - 14204363
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||| |||||||    
T  14204312 tatgtaggggctggggttcgaacctcggacactccacttctccacaatttaa 14204363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15238929 - 15238980
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||| |||||||||||| | ||||||||||||| |||||||||||    
T  15238929 tatgcaggggccggggttcgaaccccggacactccacttctccataatttaa 15238980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25833595 - 25833646
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||||||||||||| |||| |||||||||| ||| |||||||    
T  25833595 tatgcaggggctggggttcgaaccccagatactccacttctccacaatttaa 25833646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47641085 - 47641136
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  47641085 tatgtaggggctggggttcgaaccccagacactccacttctccacaatttaa 47641136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30388537 - 30388489
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||| ||||    
T  30388537 tatgcaggggccggggttcgaaccccagacactccacttctccacaatt 30388489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32074425 - 32074377
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||||||||||||||||| | ||||||||||||| ||| ||||    
T  32074425 tatgcaggggctggggttcgaaccccggacactccacttctccacaatt 32074377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32750056 - 32750104
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||| |||| |||||||||| ||||||||||||||||| ||||||||    
T  32750056 tatgcacgggcaggggttcgaatctcagacactccacttctccataatt 32750104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35835729 - 35835681
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||| |||| |||||||||||||||||||||||||||| ||| ||||    
T  35835729 tatgcaagggccggggttcgaacctcagacactccacttctccacaatt 35835681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 48447789 - 48447837
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||| ||||    
T  48447789 tatgcaggggccggggttcgaaccccagacactccacttctccacaatt 48447837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6973524 - 6973493
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacac 32  Q
    ||||||||||||||||||||||||||||||||    
T  6973524 tatgcaggggctggggttcgaacctcagacac 6973493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32856947 - 32856896
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||||||||  ||||||||| ||||||||||||||| ||| |||||||    
T  32856947 tatgcaggggctgaagttcgaaccccagacactccacttctccacaatttaa 32856896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38889523 - 38889472
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||||||||| |||||| ||| ||||||||||||||| ||| |||||||    
T  38889523 tatgcaggggctgaggttcgtaccccagacactccacttctccacaatttaa 38889472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48719839 - 48719890
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    |||||||| || |||||||||||| ||||||||||||||| ||| |||||||    
T  48719839 tatgcaggagccggggttcgaaccccagacactccacttctccacaatttaa 48719890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 36469734 - 36469684
Alignment:
Q  2 atgcaggggctggggttcgaacctcagacactccacttccccataatttaa 52  Q
    ||||||| || |||||||||||| | ||||||||||||| |||||||||||    
T  36469734 atgcaggagccggggttcgaaccccggacactccacttctccataatttaa 36469684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23755044 - 23754999
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccata 46  Q
    ||||||||||||| | |||||||||||||||| ||||||| |||||    
T  23755044 tatgcaggggctgagattcgaacctcagacaccccacttctccata 23754999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 12166121 - 12166157
Alignment:
Q  3 tgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  12166121 tgcaggggctggggttcgaaccccagacaccccactt 12166157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12640619 - 12640571
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| || |||||||||||| ||||||||||||||| ||| ||||    
T  12640619 tatgcaggagccggggttcgaaccccagacactccacttctccacaatt 12640571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42548058 - 42548010
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||| ||||||||||||||||||||| ||||||| ||||| ||| ||||    
T  42548058 tatgtaggggctggggttcgaacctcggacactctacttctccacaatt 42548010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47463971 - 47464019
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||| ||||||||||||||| ||||| ||||||| ||| ||||    
T  47463971 tatgcaggggttggggttcgaacctcggacaccccacttctccacaatt 47464019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48674592 - 48674544
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||||| |||||||| |||| | ||||||||||||| ||||||||    
T  48674592 tatgcaggggttggggttcaaaccccggacactccacttctccataatt 48674544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17989 - 17951
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccactt 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  17989 tatgcaggggctggggttcgaaccccagacactccactt 17951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1787 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 440 - 479
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttc 40  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  440 tatgcaggggccggggttcgaacctcggacactccacttc 479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17660 - 17708
Alignment:
Q  1 tatgcaggggctggggttcgaacctcagacactccacttccccataatt 49  Q
    |||||||| ||||||||||||||| | ||||||||||||| ||| ||||    
T  17660 tatgcaggagctggggttcgaaccccggacactccacttctccacaatt 17708  T

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