View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_high_41 (Length: 211)
Name: NF19372_high_41
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 1516461 - 1516282
Alignment:
| Q |
15 |
atatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttttgtttcatgcagagctaacaaaaatgttccaattcaacctgagctg |
114 |
Q |
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| T |
1516461 |
atatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttctgtttcatgcagagctacaaaaaatgttccaattcataatgagttg |
1516362 |
T |
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| Q |
115 |
aatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaagagagcatatag |
194 |
Q |
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| T |
1516361 |
aatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaagagagcatatag |
1516282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 1530691 - 1530512
Alignment:
| Q |
15 |
atatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttttgtttcatgcagagctaacaaaaatgttccaattcaacctgagctg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| || |
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| T |
1530691 |
atatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttctgtttcatgcagagctacaaaaaatgttccaattcataatgagttg |
1530592 |
T |
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| Q |
115 |
aatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaagagagcatatag |
194 |
Q |
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| T |
1530591 |
aatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaagagagcatatag |
1530512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 7978366 - 7978413
Alignment:
| Q |
147 |
tttgagtcctaaaagtgcaacaatggatgacataaagagagcatatag |
194 |
Q |
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| T |
7978366 |
tttgagtcctagaagttcaacaatgaatgacataaagagagaatatag |
7978413 |
T |
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