View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_high_9 (Length: 502)
Name: NF19372_high_9
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 483
Target Start/End: Complemental strand, 2018774 - 2018299
Alignment:
| Q |
7 |
tcgaagaatatgaaaagtatgtactcttaggccgtaaacctgaccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatatt |
106 |
Q |
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| T |
2018774 |
tcgaaaaacatgaaaagtatgtactcttaggccgtaaacctgaccaataagtattgtagcataagcatgctaaaaatcatgcatgggccttgaaaatatt |
2018675 |
T |
|
| Q |
107 |
tggtagtgattcggatgaacaacattcatctgaaaattaatgagaggcatttgcttattatttgtcagaaatttaacagaattaagcgaagttgtatgct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
2018674 |
tggtagtgattcggatgaacaacattcatctgaaaattaatgagagacatttgcttattatttgtcagaaatttaacagaattcagtgaagttgtatgct |
2018575 |
T |
|
| Q |
207 |
taaatgctttaattttttaaagttgaacagaaccacgagacatgcttccnnnnnnnnc-ttcacttcttccattcttggatagaattgcatctatagaac |
305 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2018574 |
taaatgctttaatttttcaaagttgaacagaaccacgagacatgcttcattttttttctttcacttcttccattattggatagaattgcatctatagaac |
2018475 |
T |
|
| Q |
306 |
aaacaaaagaaatcttcaatgaaggttgtcaagttatggattggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaa |
405 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2018474 |
aaacaaaagaaatcttcaatgaaggttgtcaagatatggatcggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatactatttaa |
2018375 |
T |
|
| Q |
406 |
ataacctcagtgatacagtattgacactgaatcttacattttgttgacaattctttggcgttgatcaggttgcagttg |
483 |
Q |
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| T |
2018374 |
ataacctc--tgatacaatattgatactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttg |
2018299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 50 - 483
Target Start/End: Complemental strand, 2021287 - 2020861
Alignment:
| Q |
50 |
ccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaacaacattcatctgaaaattaatga |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |
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| T |
2021287 |
ccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaatcacattcaactgaaaattaacga |
2021188 |
T |
|
| Q |
150 |
gaggcatttgcttattatttgtcagaaatttaacagaattaagcgaagttgtatgcttaaatgctttaattttttaaagttgaacagaaccacgagacat |
249 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||| ||||| | |
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| T |
2021187 |
gaggcatttgcctattatttgtcagaaattgaacagaattgagcgaagttgtatgcttaaatgattaaatttttttaagttgaacagaaccgcgagatgt |
2021088 |
T |
|
| Q |
250 |
gcttccnnnnnnnncttcacttcttccattcttggatagaattgcatctatagaacaaacaaaagaaatcttcaatgaaggttgtcaagttatggattgg |
349 |
Q |
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| T |
2021087 |
gcttc--atgatttttttacatcttccattcttggatagaattgcatctatagaacaaacaaaagaaatcttcaataaaggttctcaatttatggattga |
2020990 |
T |
|
| Q |
350 |
ttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaaataacctcagtgatacagtattgacactgaatcttacattttgt |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||| || | |
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| T |
2020989 |
ttattcatttcttaattttcttttgaaatgca---acatgtaaaaatactatttaaataacctc--tgacacagtattgacaccaaatcttacatattat |
2020895 |
T |
|
| Q |
450 |
tgacaattctttggcgttgatcaggttgcagttg |
483 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
2020894 |
tgacaattctttggcgttgatcaggttgcagttg |
2020861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 327 - 477
Target Start/End: Complemental strand, 1989351 - 1989200
Alignment:
| Q |
327 |
aaggttgtcaa-gttatggattggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaaataacctcagtgatacagta |
425 |
Q |
| |
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||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||| |||| ||| ||| |||||||||||||||||||||| |||| |
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| T |
1989351 |
aaggttgtcaaagttatggattgattattaatttcttaattttcttttcaaatgcaacaacagctaacaatgctatttaaataacctcagtgataaagta |
1989252 |
T |
|
| Q |
426 |
ttgacactgaatcttacattttgttgacaattctttggcgttgatcaggttg |
477 |
Q |
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| T |
1989251 |
ctgacactgaatcttacattttgttgacgattctatggcgttgatcaggttg |
1989200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 1989592 - 1989427
Alignment:
| Q |
75 |
gctaaaaatcatgcatggaccttgaaaatatttggtagtgattcggatgaacaacattcatctgaaaattaatgagaggcatttgcttattatttgtcag |
174 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||| |
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| T |
1989592 |
gctaaaaataatgcatggaacttgaaaatatttagtagtgattcagatgaacaacattcatctgaaaattaatga-ttgcatttgcctattatttctcaa |
1989494 |
T |
|
| Q |
175 |
aaatttaacagaa--ttaagcgaagttgtatgcttaaatgctttaattttttaaagttgaacagaac |
239 |
Q |
| |
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||||| || |||| || |||||||||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
1989493 |
aaattgaatagaattttgagcgaagttgtatgctaaaatgatttaattttttaaagttaaacagaac |
1989427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 2035751 - 2035688
Alignment:
| Q |
420 |
acagtattgacactgaatcttacattttgttgacaattctttggcgttgatcaggttgcagttg |
483 |
Q |
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| T |
2035751 |
acagtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttg |
2035688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 466
Target Start/End: Original strand, 44969352 - 44969406
Alignment:
| Q |
412 |
tcagtgatacagtattgacactgaatcttacattttgttgacaattctttggcgt |
466 |
Q |
| |
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| T |
44969352 |
tcagtgatacagtactaaaactagagcttacattttgttgacaattctttggcgt |
44969406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Complemental strand, 40910611 - 40910583
Alignment:
| Q |
438 |
cttacattttgttgacaattctttggcgt |
466 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
40910611 |
cttacattttgttgacaattctttggcgt |
40910583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Original strand, 44983701 - 44983729
Alignment:
| Q |
438 |
cttacattttgttgacaattctttggcgt |
466 |
Q |
| |
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| T |
44983701 |
cttacattttgttgacaattctttggcgt |
44983729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 44999530 - 44999570
Alignment:
| Q |
422 |
agtattgacactgaatcttacattttgttgacaattctttg |
462 |
Q |
| |
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|||||| | |||||| ||||||||||||||||||||||||| |
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| T |
44999530 |
agtattaaaactgaaacttacattttgttgacaattctttg |
44999570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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