View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_1 (Length: 816)
Name: NF19372_low_1
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 743; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 17 - 804
Target Start/End: Original strand, 3424915 - 3425706
Alignment:
| Q |
17 |
gtttcctaaatgtgtcttatgt----aattttagtgatcaaattgactagcagaagacacgttcgattgacaaactaattaacaaaagacacaaccaaac |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
3424915 |
gtttcctaaatgtgtcttatgttagtaattttagtgatcaaattgactagcggaagacacattcaattgacaaactaattaacaaaagacacaaccaaac |
3425014 |
T |
|
| Q |
113 |
tggcttatgaaagatgtatatatttctgtaagttttgatatattcaaaacctattgtcgcaacaccacaacgtttaagagccaaagggattgtttaatcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425015 |
tggcttatgaaagatgtatatatttctgtaagttttgatatattcaaaacctattgtcgcaacaccacaacgtttaagagccaaagggattgtttaatcc |
3425114 |
T |
|
| Q |
213 |
gcaatcaatttgaaaatttcaggaatttttatttcagctatgttgtcaatagcacgctatagcggtgtagtttggcggcgctgccctccacttccgcacc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3425115 |
gcaatcaatttgaaaatttcaggaatttttatttcagctatgttgccaatagcacgctatagcggtgtagtttggcagcgctgccctccacttccgcacc |
3425214 |
T |
|
| Q |
313 |
ataggcccgaaaagcgccattgagagtatcatcactagcggcctatattagtggttaaaaagcagcgccattgcggcgctggtgctatcccggtaccgtt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425215 |
ataggcccgaaaagcgccattgagagtatcatcactagcggcctatattagtggttaaaaagcagcgccattgcggcgctggtgctatcccggtaccgtt |
3425314 |
T |
|
| Q |
413 |
gtgatttgatgtctgctattgcaattttagggaaaaattctcaaaaatcctgttaccgtatctttgagtttgagttctgtcattgttgccttgtattgac |
512 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425315 |
gtgatttgatatctgctattgcaattttagggaaaaattctcaaaaatcctgttaccgtatctttgagtttgagttctgtcattgttgccttgtattgac |
3425414 |
T |
|
| Q |
513 |
catgaaaataaggaagttagtgtcattcacagagataacttgtgtagcaagttatcttgttagttatccataattaactgtcatagctagaatcttgtat |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425415 |
catgaaaataaggaagttagtgtcattcacagagataacttgtgtagcaagttatcttgttagttatccataattaactgtcatagctagaatcttgtat |
3425514 |
T |
|
| Q |
613 |
agcgtatctacaatagctatcatacacactcttgtgccctataagacaaatatggtatgacttatgagagcctggttatgtcatcattgttctccatcct |
712 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425515 |
agcgtatctacaatagctatcatacacactcttgtgtcctataagacaaatatggtatgacttatgagagcctggttatgtcatcattgttctccatcct |
3425614 |
T |
|
| Q |
713 |
tgctctatttctgtgcaaaagtttgcactgtccatcctttctatttctgctcgagttcttttctggttcgtttctggtttcgttcttctcct |
804 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3425615 |
tgctctatttctgtgcaaaagtttgcactgtccatcctttctatttctgctcgagttcttttttggttcgtttctggtttcgttcttctcct |
3425706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 9832993 - 9832953
Alignment:
| Q |
248 |
agctatgttgtcaatagcacgctatagcggtgtagtttggc |
288 |
Q |
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| T |
9832993 |
agctatgttgtcaatagcacactatagcggtgtagtgtggc |
9832953 |
T |
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