View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_low_12 (Length: 468)

Name: NF19372_low_12
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_low_12
NF19372_low_12
[»] chr3 (19 HSPs)
chr3 (20-461)||(22621057-22621498)
chr3 (42-461)||(22657209-22657628)
chr3 (51-446)||(22648317-22648711)
chr3 (163-302)||(22034542-22034681)
chr3 (163-333)||(22615530-22615700)
chr3 (163-302)||(22028025-22028164)
chr3 (163-302)||(22187013-22187152)
chr3 (163-302)||(22115110-22115249)
chr3 (171-302)||(21937186-21937317)
chr3 (163-302)||(21945649-21945788)
chr3 (151-293)||(22208033-22208175)
chr3 (163-302)||(21930446-21930585)
chr3 (163-302)||(22052758-22052897)
chr3 (190-302)||(22179469-22179581)
chr3 (166-216)||(18967373-18967423)
chr3 (169-293)||(22104754-22104878)
chr3 (172-230)||(2749064-2749122)
chr3 (172-230)||(2807336-2807394)
chr3 (172-230)||(2838611-2838669)
[»] chr1 (4 HSPs)
chr1 (28-461)||(34980050-34980485)
chr1 (28-461)||(34989107-34989540)
chr1 (29-461)||(34975273-34975705)
chr1 (247-461)||(2305628-2305842)
[»] chr8 (1 HSPs)
chr8 (170-298)||(27294580-27294708)
[»] chr4 (1 HSPs)
chr4 (272-320)||(29610855-29610903)


Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 22621498 - 22621057
Alignment:
Q  20 ctattgaacaaggatcaagccactttagaggaagccaaaaggcgaaatggcatgaccctcgaatggctgctttatatattgatgaatttgaaattgtagg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22621498 ctattgaacaaggatcaagccactttagaggaagccaaaaggcgaaatggcatgaccctcgaatggctgctttatatattgatgaatctgaaattgtagg 22621399  T
Q  120 ctttcaagaacccaaaaatagattgattggattgttggtggatggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatcc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22621398 ctttcaagaacccaaaaatagattgattggattgttggtggatggaagagaagagcgaactgtcatctctgtggtaggaatgggaggacaaggaaaatcc 22621299  T
Q  220 actcttgccaaaaaggttttcgacagcaaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacaatatagaggggttgc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22621298 actcttgccaaaaaggttttcgacagcaaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacgatatagaggggttgc 22621199  T
Q  320 tgagatacatgttgaaggagatttaccaacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22621198 tgagatacatgttgaaggagatttaccaacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaa 22621099  T
Q  420 ccacttgcaacaaaagaggtatgtttttgtatttgatgatgt 461  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22621098 ccacttgcaacaaaagaggtatgtttttgtatttgatgatgt 22621057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 42 - 461
Target Start/End: Complemental strand, 22657628 - 22657209
Alignment:
Q  42 ctttagaggaagccaaaaggcgaaatggcatgaccctcgaatggctgctttatatattgatgaatttgaaattgtaggctttcaagaacccaaaaataga 141  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||||||| |||||||||   |||||| |||||||||||| ||||||||| |||    
T  22657628 ctttagaggaagccaaactgccaaatggcatgaccctcgaatggctgctttatacattgatgaagcggaaattataggctttcaagcacccaaaaaaaga 22657529  T
Q  142 ttgattggattg-ttggtggatggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttc 240  Q
    || | | ||||| |||||  | ||||||  ||||||||||||||| ||||| || ||||||||||| ||||||||| | |||||||| ||||| |||||     
T  22657528 tt-agtagattggttggtaaagggaagatcagagcgcactgtcatatctgtcgtgggaatgggagggcaaggaaaaactactcttgctaaaaaagttttt 22657430  T
Q  241 gacagcaaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacaatatagaggggttgctgagatacatgttgaaggaga 340  Q
    ||||||||||||||  | |||||||| |||| |||||| ||| |||||||||||||||| ||||||||||| | |||| |||||  |||||||||||||     
T  22657429 gacagcaaagaggttgttggacactttgaatgtcgtgtttggatcacagtgtcacaatcttacaatatagaagtgttgttgagacgcatgttgaaggagc 22657330  T
Q  341 tttaccaacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaaccacttgcaacaaaagaggta 440  Q
    ||||| |||||||||||||| | ||| ||||||||||| |||||||||||| |||  ||||||||||| || |||||||  |||||||  ||||||||||    
T  22657329 tttacaaacaaaaaggagacaatcctcctcaagatatcactgaaatggatcgaggcgcattgatttctgagctgagaaaatacttgcagaaaaagaggta 22657230  T
Q  441 tgtttttgtatttgatgatgt 461  Q
    ||||||||| |||||||||||    
T  22657229 tgtttttgtgtttgatgatgt 22657209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 51 - 446
Target Start/End: Complemental strand, 22648711 - 22648317
Alignment:
Q  51 aagccaaaaggcgaaatggcatgaccctcgaatggctgctttatatattgatgaatttgaaattgtaggctttcaagaacccaaaaatagattgattgga 150  Q
    ||||||||| |  ||||||||||||||||||| |||||||||||| |||| ||||   ||||| |||||| |||||| ||| | |||   | |||||||     
T  22648711 aagccaaaatgttaaatggcatgaccctcgaacggctgctttatacattggtgaagcagaaatggtaggccttcaagcaccaagaaaacaaatgattggt 22648612  T
Q  151 ttgttggtggatggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaag 250  Q
    | |||||| || ||||||  ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||| ||| || || ||||||||||    
T  22648611 tggttggtagagggaagatcagagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgccagaaaagtgtttgacagcaaag 22648512  T
Q  251 aggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacaatatagaggggttgctgagatacatgttgaaggagatttaccaaca 350  Q
    ||||   ||||||||| |||| |||||||||| ||| |||||  ||||||||| ||| ||| ||||||||||||  ||||||||| ||| ||||| ||||    
T  22648511 aggtagcgggacactttgaatttcgtgtatggatcaaagtgttgcaatcatactatacagaagggttgctgagaggcatgttgaatgagctttacaaaca 22648412  T
Q  351 aaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaaccacttgcaacaaaagaggtatgtttt 446  Q
    ||||||||| || ||| || ||| ||||||  ||||||||  |||||| ||||||||| || |||||||| |||||||||||||||||||||||||    
T  22648411 aaaaggagaagagcctcctaaaggtatctcgaaaatggat-gagggtcgttgatttctgagctgagaaactacttgcaacaaaagaggtatgtttt 22648317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 22034542 - 22034681
Alignment:
Q  163 ggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 262  Q
    ||||| ||||||||||||||  | |||||||||||||||||||| ||||||||| | ||||| ||||| || ||||| |||||||| ||  |||||||||    
T  22034542 ggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggac 22034641  T
Q  263 acttcgaatatcgtgtatgggtcacagtgtcacaatcata 302  Q
    |||| || |||||||||||| | |||||||| ||||||||    
T  22034642 actttgattatcgtgtatggattacagtgtctcaatcata 22034681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 333
Target Start/End: Complemental strand, 22615700 - 22615530
Alignment:
Q  163 ggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 262  Q
    ||||||| ||||||||||||  |||||||||| ||||||||||| || || ||| ||||||||||||| || ||||| || ||||| |||||    ||||    
T  22615700 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggac 22615601  T
Q  263 acttcgaatatcgtgtatgggtcacagtgtcacaatcatacaatatagaggggttgctgagatacatgttg 333  Q
    |||| || | |||||||||| |||||||||| |||||||||| |||||| |||||| ||||  ||||||||    
T  22615600 actttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttg 22615530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 22028025 - 22028164
Alignment:
Q  163 ggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 262  Q
    ||||| ||||||||||||||  | |||||||||||||||||||| ||||||||| | ||||| ||||| || ||||| |||||||| ||  |||||||||    
T  22028025 ggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggac 22028124  T
Q  263 acttcgaatatcgtgtatgggtcacagtgtcacaatcata 302  Q
    |||| || | |||||||||| | |||||||| ||||||||    
T  22028125 actttgattgtcgtgtatggattacagtgtctcaatcata 22028164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 22187013 - 22187152
Alignment:
Q  163 ggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 262  Q
    ||||| ||||||||||||||  | |||||||||||||||||||| ||||||||| | ||||| ||||| || ||||| |||||||| ||  |||||||||    
T  22187013 ggaagggaagagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggac 22187112  T
Q  263 acttcgaatatcgtgtatgggtcacagtgtcacaatcata 302  Q
    |||| || | |||||||||| | |||||||| ||||||||    
T  22187113 actttgattgtcgtgtatggattacagtgtctcaatcata 22187152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 22115110 - 22115249
Alignment:
Q  163 ggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 262  Q
    ||||| ||||||||||||||  | |||||||||||||||||||| ||||||||| |||||||  | || || ||||| |||||||| ||  |||| ||||    
T  22115110 ggaagggaagagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaaccactctatcaaagaaagtttttgacagcaaggatatcattggac 22115209  T
Q  263 acttcgaatatcgtgtatgggtcacagtgtcacaatcata 302  Q
    |||| || | |||||||||| |||||||||| ||||||||    
T  22115210 actttgattgtcgtgtatggatcacagtgtctcaatcata 22115249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 302
Target Start/End: Original strand, 21937186 - 21937317
Alignment:
Q  171 agagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggacacttcgaa 270  Q
    ||||||||||||  | |||||||||||||||||||| ||||||||| ||||||| || || || | ||| |||||||| || ||| | |||||||| ||     
T  21937186 agagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgttggacactttgat 21937285  T
Q  271 tatcgtgtatgggtcacagtgtcacaatcata 302  Q
    | |||||||||| |||||||||| ||| ||||    
T  21937286 tgtcgtgtatggatcacagtgtctcaagcata 21937317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 21945649 - 21945788
Alignment:
Q  163 ggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 262  Q
    ||||| || |||||||||||  | || ||||||||||||||||| ||||||||| ||||||| ||||| || ||||| |||||||| || |||||  |||    
T  21945649 ggaagggaggagcgcactgtagtttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgtcatttgac 21945748  T
Q  263 acttcgaatatcgtgtatgggtcacagtgtcacaatcata 302  Q
    |||| || | || ||||||| |||| ||||| ||||||||    
T  21945749 actttgattgtcttgtatggatcactgtgtctcaatcata 21945788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 293
Target Start/End: Original strand, 22208033 - 22208175
Alignment:
Q  151 ttgttggtggatggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaag 250  Q
    |||||| | ||||||||| |||||| ||||||  |||| ||||| || |||||||| ||||| ||| | |||||||||||  | ||||| ||||||||||    
T  22208033 ttgttgatagatggaagaaaagagctcactgttgtctcggtggttgggatgggagggcaaggtaaaacaactcttgccaagcaagtttttgacagcaaag 22208132  T
Q  251 aggtcatgggacacttcgaatatcgtgtatgggtcacagtgtc 293  Q
    |||| || ||| |||| || | |||||||||| ||||||||||    
T  22208133 aggttattggatactttgattgtcgtgtatggatcacagtgtc 22208175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 21930446 - 21930585
Alignment:
Q  163 ggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 262  Q
    ||||| ||||||||||||||  | |||||||||||||||||||| ||||||||| | ||||| ||||| || ||||| |||||||| ||  |||| ||||    
T  21930446 ggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggac 21930545  T
Q  263 acttcgaatatcgtgtatgggtcacagtgtcacaatcata 302  Q
    | ||  | |  || |||||| |||||||||| ||||||||    
T  21930546 attttcatttccgagtatggatcacagtgtctcaatcata 21930585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 22052758 - 22052897
Alignment:
Q  163 ggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 262  Q
    ||||| ||||||||||||||  | ||| |||||||||||||||| ||||||||| | ||||| ||||| || ||||| |||||||| ||  |||| ||||    
T  22052758 ggaagggaagagcgcactgtggtttctctggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggac 22052857  T
Q  263 acttcgaatatcgtgtatgggtcacagtgtcacaatcata 302  Q
    | || || | ||| |||||| | |||||||| ||||||||    
T  22052858 attttgattgtcgggtatggattacagtgtctcaatcata 22052897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 302
Target Start/End: Original strand, 22179469 - 22179581
Alignment:
Q  190 gtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggacacttcgaatatcgtgtatgggtcacag 289  Q
    ||||| ||||||||||| ||||||||| | ||||| ||||| || ||||| |||||||| ||  |||| |||||||| || | |||||||||| | ||||    
T  22179469 gtggtgggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacactttgattgtcgtgtatggattacag 22179568  T
Q  290 tgtcacaatcata 302  Q
    |||| ||||||||    
T  22179569 tgtctcaatcata 22179581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 18967423 - 18967373
Alignment:
Q  166 agagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaa 216  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||||||||    
T  18967423 agagaagagggcactatcatctctgtggtaggaatgggagggcaaggaaaa 18967373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 22104754 - 22104878
Alignment:
Q  169 gaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggacacttcg 268  Q
    ||||||||||||||  | || ||||||||||||||||| ||||||||| | ||||| ||||| |  ||||| |||||||| || || || |||||||| |    
T  22104754 gaagagcgcactgtagtttcggtggtaggaatgggagggcaaggaaaaacaactctagccaagagagtttttgacagcaaggatgtaattggacactttg 22104853  T
Q  269 aatatcgtgtatgggtcacagtgtc 293  Q
    | | || ||| ||| ||||||||||    
T  22104854 attgtcatgtttggatcacagtgtc 22104878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 2749064 - 2749122
Alignment:
Q  172 gagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaa 230  Q
    |||||||| || || || ||||||||||||||||| | ||||||| |||||||||||||    
T  2749064 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaa 2749122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 2807336 - 2807394
Alignment:
Q  172 gagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaa 230  Q
    |||||||| || || || ||||||||||||||||| | ||||||| |||||||||||||    
T  2807336 gagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaa 2807394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 2838669 - 2838611
Alignment:
Q  172 gagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaa 230  Q
    |||||||| ||||| || |||||||||||||| || | ||||||| |||||||||||||    
T  2838669 gagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaa 2838611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 28 - 461
Target Start/End: Original strand, 34980050 - 34980485
Alignment:
Q  28 caaggatcaagccactttagaggaagccaaaaggcgaaatggcatgaccctcgaatggctgctttatatattgatgaatttgaaattgtaggctttcaag 127  Q
    |||||||| |||  |||| |||||| |||||| || |||||||| ||||| ||||||||||||||||| ||  | |||| |||| |||||||||||||||    
T  34980050 caaggatctagcagctttcgaggaatccaaaatgccaaatggcacgacccacgaatggctgctttatacatcaacgaatctgaagttgtaggctttcaag 34980149  T
Q  128 aacccaaaaatagattgattggattgttggtggatggaagagaagagcgcactgt--catctctgtggtaggaatgggaggacaaggaaaatccactctt 225  Q
    |||||||||||||||||||||  | ||||||  | ||||||| ||||||||||||  ||||||||| || ||||||||||| |||||||||   ||||||    
T  34980150 aacccaaaaatagattgattgattggttggtaaagggaagagtagagcgcactgtgtcatctctgtagttggaatgggagggcaaggaaaaataactctt 34980249  T
Q  226 gccaaaaaggttttcgacagcaaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacaatatagaggggttgctgagat 325  Q
    || ||||| ||||| || |||||||||||  |||||||||| |||| |||||||||| ||||||||||||||||||||||||| || |  |||||||||     
T  34980250 gctaaaaaagtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagtattgctgagac 34980349  T
Q  326 acatgttgaaggagatttaccaacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaaccactt 425  Q
     |||||||||| || ||||| |||||||||||||  | |||  | |||||||| |||||||||||| ||   ||||||||| | ||||||||||  ||||    
T  34980350 gcatgttgaagaagctttacgaacaaaaaggagaacatcctcttgaagatatcactgaaatggatcgagatgcattgatttatgagttgagaaattactt 34980449  T
Q  426 gcaacaaaagaggtatgtttttgtatttgatgatgt 461  Q
    |||  ||||||||||||||||||| |||||||||||    
T  34980450 gcagaaaaagaggtatgtttttgtgtttgatgatgt 34980485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 28 - 461
Target Start/End: Original strand, 34989107 - 34989540
Alignment:
Q  28 caaggatcaagccactttagaggaagccaaaaggcgaaatggcatgaccctcgaatggctgctttatatattgatgaatttgaaattgtaggctttcaag 127  Q
    |||||||| |||  ||||||||||| |||||| || |||||| | || |  ||||||||||||||||| || ||||||  |||| | |||||||||||||    
T  34989107 caaggatctagcagctttagaggaaaccaaaacgccaaatggaacgatcaacgaatggctgctttatacatcgatgaagctgaagtcgtaggctttcaag 34989206  T
Q  128 aacccaaaaatagattgattggattgttggtggatggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgc 227  Q
    |||||||||||||||||||||  | | ||||  | ||||||| ||||||||||||||||||||| || || |||||||| ||||||||| ||||||||||    
T  34989207 aacccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgc 34989306  T
Q  228 caaaaaggttttcgacagcaaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacaatatagaggggttgctgagatac 327  Q
     ||||||||||| || |||||||||||  |||||||||| |||| |||||||||| ||||||||||||||||| |||| |  || |  |||  |||| ||    
T  34989307 taaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcaaacaacactgaagtattgtcgagacac 34989406  T
Q  328 atgttgaaggagatttaccaacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaaccacttgc 427  Q
    |||||| || || |||||  ||||||||||||  | ||| || |||  ||| |||||||||||| |||  ||||||||||| ||||||||||  ||||||    
T  34989407 atgttggagaagctttacggacaaaaaggagaaaaacctcctaaaggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgc 34989506  T
Q  428 aacaaaagaggtatgtttttgtatttgatgatgt 461  Q
    |  ||||||||||||||||||| |||||||||||    
T  34989507 agaaaaagaggtatgtttttgtgtttgatgatgt 34989540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 29 - 461
Target Start/End: Original strand, 34975273 - 34975705
Alignment:
Q  29 aaggatcaagccactttagaggaagccaaaaggcgaaatggcatgaccctcgaatggctgctttatatattgatgaatttgaaattgtaggctttcaaga 128  Q
    ||||||| |||  ||||||||||  |||||| || |||||||| || || ||||||||||||||||  || ||||||  |||| ||||||||||||||||    
T  34975273 aaggatctagcagctttagaggagtccaaaatgccaaatggcacgatccacgaatggctgctttattcatcgatgaagctgaagttgtaggctttcaaga 34975372  T
Q  129 acccaaaaatagattgattggattgtt-ggtggatggaagagaagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgc 227  Q
    ||||||||| | |||||||| |||||| |||  | ||||||| ||||||||||||||||||||| || || |||||||| ||||||||| ||||||||||    
T  34975373 acccaaaaaaatattgattg-attgtttggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgc 34975471  T
Q  228 caaaaaggttttcgacagcaaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacaatatagaggggttgctgagatac 327  Q
     ||||||||||| || |||||||||||  |||||||||| |||| |||||||||| ||||||||||||||||| |||| |  || |  |||  |||| ||    
T  34975472 taaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcacacaacactgaagtattgtcgagacac 34975571  T
Q  328 atgttgaaggagatttaccaacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaaccacttgc 427  Q
    |||||| || || |||||  ||||||||||||  | ||| || |||  ||| |||||||||||| |||  ||||||||||| ||||||||||  ||||||    
T  34975572 atgttggagaagctttacggacaaaaaggagaaaaacctcctaaaggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgc 34975671  T
Q  428 aacaaaagaggtatgtttttgtatttgatgatgt 461  Q
    |  ||||||||||||||||||| |||||||||||    
T  34975672 agaaaaagaggtatgtttttgtgtttgatgatgt 34975705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 461
Target Start/End: Complemental strand, 2305842 - 2305628
Alignment:
Q  247 aaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacaatatagaggggttgctgagatacatgttgaaggagatttacc 346  Q
    ||||||||  |||||||||| |||| |||||||||| ||||| |||||||||||||||||||||| |  ||| |||||| |||||||||| || || ||     
T  2305842 aaagaggttgtgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacg 2305743  T
Q  347 aacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaaccacttgcaacaaaagaggtatgtttt 446  Q
    ||||||||| |||    |   || ||||||||| ||||||||||| |||   |||||||| | ||||||||||  |||||||  | ||||||||||||||    
T  2305742 aacaaaaagtagaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttt 2305643  T
Q  447 tgtatttgatgatgt 461  Q
    ||| |||||| ||||    
T  2305642 tgtgtttgataatgt 2305628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 298
Target Start/End: Original strand, 27294580 - 27294708
Alignment:
Q  170 aagagcgcactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggacacttcga 269  Q
    ||||| |||||||  | |||||||||||||||||||||||||||||| ||||||| | ||| || ||||| |||||||| || ||||| |||||| | ||    
T  27294580 aagagggcactgtagtttctgtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggacaccttga 27294679  T
Q  270 atatcgtgtatgggtcacagtgtcacaat 298  Q
     |||||||||||| |||||||||| ||||    
T  27294680 ctatcgtgtatggatcacagtgtctcaat 27294708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 29610903 - 29610855
Alignment:
Q  272 atcgtgtatgggtcacagtgtcacaatcatacaatatagaggggttgct 320  Q
    ||||||||||| ||||||| |||||||||||||||||||| || |||||    
T  29610903 atcgtgtatggatcacagtatcacaatcatacaatatagaaggattgct 29610855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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