View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_13 (Length: 436)
Name: NF19372_low_13
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 40942955 - 40942538
Alignment:
| Q |
19 |
ctgatgcactttgaaggaaacgttgcatgatatccaataagatgcccctcaggaatctcttaatcatatgaatccttatcagctatattatctttaccat |
118 |
Q |
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| T |
40942955 |
ctgatgcactttgaaggaaacgttgcatgatatccaataagatgcccctcaggaatctcttaatcatacgaatccttatcagctatattatctttaccat |
40942856 |
T |
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| Q |
119 |
cattcagctgaattgccattttcttttgcttgggttacaccaacttccgctggccgaataacacgatcatgaagcaaatatcctgcctgcaaacataaca |
218 |
Q |
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| T |
40942855 |
cattcagctgaattgccattttcttttgcttgggttacaccaacttccgctggccgaataacacgatcatgaagcaaatatcctgcctgcaaacataaca |
40942756 |
T |
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| Q |
219 |
gttggatagatttttattcatgttttcaatctcctaaataaacctatcgaacaaaatcgtgaataaggataagtttgttccaacattcaatgaaacaaaa |
318 |
Q |
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| T |
40942755 |
gttggatagatttttattcatgttttcaatctcctaaataaacctatcgaacaaaatcgtgaataaggacaagtttgttccaacattcaatgaaacaaaa |
40942656 |
T |
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| Q |
319 |
cctctgatccaaaggatctttaatagaccaccataagtgggaagtatctgcatgattgattgagataataaaaccaagagcttgtctaacttgtcacact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40942655 |
cctctgatccaaaggatctttaatagaccaccataagtgggaagtatctgcatgattgattgagataataaaaccaagagcttgtctaacttgtcacatt |
40942556 |
T |
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| Q |
419 |
gcaaatcgaaagggcatc |
436 |
Q |
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| T |
40942555 |
gcaaatcgaaagggcatc |
40942538 |
T |
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