View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_14 (Length: 429)
Name: NF19372_low_14
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 35 - 414
Target Start/End: Original strand, 18719269 - 18719647
Alignment:
| Q |
35 |
tcatggaaaagtatgtaaactactactccctcctccacttattataagactcccttttgagattttattgtcccttactgtgagactattttcaaaattt |
134 |
Q |
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| T |
18719269 |
tcatggaaaagtatgtaaactactactccctcctccacttattataagactcccttttgagattttattgtcccttactgtgagactattttcaaaattt |
18719368 |
T |
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| Q |
135 |
cacatgcatcaatannnnnnnnnn-acaaacatggtcgtagtcgttttacaatattggtaaatgaaaatttgttctctctcccttatgatatcaataact |
233 |
Q |
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| T |
18719369 |
cacatgcatcaatatttttttttttacaaaaatggtcttagtcgttttacaat--tggtaaacgaaaatttgttctctctcccttatgatatcaataact |
18719466 |
T |
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| Q |
234 |
gtaagagtaattatgaaaaagtaacacatttttgacaaatttattgctacaaatacctttcttaatacacatgaattttgtaagtgagacttataataag |
333 |
Q |
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| T |
18719467 |
gttagagtaattatgaaaaagtaacacatttttgacaaatttattgctacaaatacctttcttaatacacatgaattttgtaagtgagacttataataag |
18719566 |
T |
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| Q |
334 |
tgacaaaaatgagtaatatatatctgccatgcaaaagtatgtaagagtacaccatagaagtggaaatcataaaaatgttag |
414 |
Q |
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| T |
18719567 |
tgacaaaaatgagtaatatatatctgccatgcaaaagtatgtaagagtacaccatagaagtggaaatcataaaaatgttag |
18719647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 25435497 - 25435434
Alignment:
| Q |
211 |
tctcccttatgatatcaataactgtaagagtaattatgaaaaagtaacacatttttgacaaatt |
274 |
Q |
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| T |
25435497 |
tctctcttatgatttcaataattgtaagggtaattatgtaaaagtaacatatttttgacaaatt |
25435434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 51600005 - 51600064
Alignment:
| Q |
219 |
atgatatcaataactgtaagagtaattatgaaaaagta--acacatttttgacaaattta |
276 |
Q |
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| T |
51600005 |
atgatatcaataattgtaagagtaattatagaaaagtaacacacatttttgacaaattta |
51600064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 333
Target Start/End: Original strand, 16764907 - 16765039
Alignment:
| Q |
200 |
aatttgttctctctcccttatgatatcaataactgtaagagtaattatgaaaaagtaacac--atttttgacaaatttattgctacaaatacctttctta |
297 |
Q |
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| T |
16764907 |
aatttgttttctctttcttatgatatgaataattgtaaggataattataaagaagtaacaagtattgttgacaaattttttgctacaact---tttctta |
16765003 |
T |
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| Q |
298 |
atacacatgaattttgtaagtgagacttataataag |
333 |
Q |
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| T |
16765004 |
atgcctgtgaattttgtaagtgagtcttataataag |
16765039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 26530648 - 26530742
Alignment:
| Q |
242 |
aattatgaaaaagtaacacatttttgacaaatttattgctacaaatacctttcttaatacacatgaattttgtaagtgagacttataataagtgac |
337 |
Q |
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| T |
26530648 |
aattatgtaaaagtaacatatttttgacaaa-ttaaggctacaactacttttcttaatatccgtaaattttgtaagtgggtcttattataagtgac |
26530742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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