View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19372_low_15 (Length: 406)

Name: NF19372_low_15
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19372_low_15
NF19372_low_15
[»] chr4 (24 HSPs)
chr4 (361-406)||(30709990-30710035)
chr4 (360-406)||(3862635-3862681)
chr4 (360-406)||(3871392-3871438)
chr4 (360-406)||(23444358-23444404)
chr4 (360-406)||(51265448-51265494)
chr4 (361-406)||(35682169-35682214)
chr4 (360-406)||(6271705-6271751)
chr4 (361-406)||(35682256-35682301)
chr4 (361-406)||(47661932-47661977)
chr4 (222-357)||(2996578-2996711)
chr4 (356-391)||(30861800-30861835)
chr4 (361-403)||(23444275-23444317)
chr4 (360-406)||(30861863-30861909)
chr4 (361-406)||(6271792-6271837)
chr4 (361-406)||(42375100-42375145)
chr4 (361-406)||(53954700-53954745)
chr4 (362-406)||(26186105-26186149)
chr4 (360-392)||(47661859-47661891)
chr4 (361-406)||(2325070-2325115)
chr4 (265-334)||(6978935-6979004)
chr4 (361-406)||(44380020-44380065)
chr4 (361-406)||(51265535-51265580)
chr4 (361-405)||(5048890-5048934)
chr4 (356-392)||(50384182-50384218)
[»] chr3 (18 HSPs)
chr3 (361-406)||(30734492-30734537)
chr3 (360-406)||(1801449-1801495)
chr3 (360-406)||(41752967-41753013)
chr3 (360-406)||(41753053-41753099)
chr3 (360-406)||(43139798-43139844)
chr3 (360-406)||(51046162-51046208)
chr3 (362-406)||(55223235-55223279)
chr3 (361-406)||(47492137-47492182)
chr3 (361-392)||(47492064-47492095)
chr3 (361-403)||(18321657-18321699)
chr3 (361-403)||(39057047-39057089)
chr3 (222-334)||(49465869-49465978)
chr3 (361-406)||(30734405-30734450)
chr3 (361-406)||(33689179-33689224)
chr3 (262-335)||(36646352-36646425)
chr3 (361-406)||(45103112-45103157)
chr3 (361-405)||(30580846-30580890)
chr3 (362-406)||(39429996-39430040)
[»] chr8 (18 HSPs)
chr8 (360-406)||(35441058-35441104)
chr8 (360-406)||(5033164-5033210)
chr8 (84-146)||(7166969-7167031)
chr8 (361-406)||(5033251-5033296)
chr8 (361-405)||(10086847-10086891)
chr8 (360-406)||(2581828-2581874)
chr8 (360-406)||(8243477-8243523)
chr8 (269-323)||(14949905-14949959)
chr8 (360-406)||(22649848-22649894)
chr8 (364-406)||(33841594-33841636)
chr8 (360-406)||(33841680-33841726)
chr8 (361-406)||(5667100-5667145)
chr8 (361-406)||(5667187-5667232)
chr8 (361-406)||(35440972-35441017)
chr8 (282-336)||(25869256-25869310)
chr8 (361-406)||(8796425-8796470)
chr8 (361-406)||(8796512-8796557)
chr8 (361-406)||(10086760-10086805)
[»] chr7 (17 HSPs)
chr7 (360-406)||(11016872-11016918)
chr7 (361-406)||(45231940-45231985)
chr7 (360-406)||(34854784-34854830)
chr7 (360-406)||(41018317-41018363)
chr7 (361-406)||(4290635-4290680)
chr7 (361-406)||(11016959-11017004)
chr7 (361-406)||(42628385-42628430)
chr7 (360-403)||(48000826-48000869)
chr7 (360-406)||(38975808-38975854)
chr7 (374-406)||(38975908-38975940)
chr7 (222-332)||(33894657-33894765)
chr7 (265-356)||(48157093-48157184)
chr7 (360-406)||(4290548-4290594)
chr7 (360-406)||(48000697-48000743)
chr7 (262-323)||(3500937-3500998)
chr7 (361-406)||(27028731-27028776)
chr7 (305-357)||(39505961-39506013)
[»] chr5 (21 HSPs)
chr5 (360-406)||(291100-291146)
chr5 (360-406)||(19655161-19655207)
chr5 (361-406)||(2953280-2953325)
chr5 (361-406)||(16971234-16971279)
chr5 (361-406)||(29699457-29699502)
chr5 (364-406)||(2356364-2356406)
chr5 (361-406)||(3899929-3899974)
chr5 (361-406)||(12913806-12913851)
chr5 (361-406)||(12913893-12913938)
chr5 (361-406)||(13312267-13312312)
chr5 (361-406)||(19655248-19655293)
chr5 (362-406)||(19598335-19598379)
chr5 (360-392)||(29699384-29699416)
chr5 (262-357)||(10272401-10272496)
chr5 (265-323)||(32172692-32172750)
chr5 (361-406)||(291187-291232)
chr5 (361-406)||(2093940-2093985)
chr5 (243-323)||(10907417-10907495)
chr5 (361-406)||(30117831-30117876)
chr5 (362-406)||(32485640-32485684)
chr5 (374-406)||(39777054-39777086)
[»] chr2 (18 HSPs)
chr2 (360-406)||(6217227-6217273)
chr2 (360-406)||(9173070-9173116)
chr2 (360-406)||(16514427-16514473)
chr2 (360-406)||(29508780-29508826)
chr2 (361-406)||(14229356-14229401)
chr2 (361-406)||(14470595-14470640)
chr2 (363-406)||(29508693-29508736)
chr2 (361-406)||(16514514-16514559)
chr2 (373-406)||(32545789-32545822)
chr2 (361-406)||(32545878-32545923)
chr2 (361-406)||(38933677-38933722)
chr2 (361-405)||(33018635-33018679)
chr2 (363-406)||(45213892-45213935)
chr2 (84-146)||(14770331-14770393)
chr2 (361-406)||(6722041-6722086)
chr2 (361-406)||(14892350-14892395)
chr2 (262-334)||(1742002-1742074)
chr2 (360-392)||(15011297-15011329)
[»] chr1 (31 HSPs)
chr1 (360-406)||(29179686-29179732)
chr1 (360-406)||(44706873-44706919)
chr1 (360-406)||(46932000-46932046)
chr1 (361-406)||(37155049-37155094)
chr1 (360-406)||(48994006-48994052)
chr1 (361-406)||(48993920-48993965)
chr1 (249-332)||(3597240-3597321)
chr1 (209-336)||(10439712-10439837)
chr1 (362-406)||(15220902-15220946)
chr1 (360-406)||(5995372-5995418)
chr1 (360-406)||(5995458-5995504)
chr1 (360-406)||(46932071-46932116)
chr1 (361-406)||(9157313-9157358)
chr1 (361-406)||(17127567-17127612)
chr1 (361-406)||(21630045-21630090)
chr1 (361-406)||(29371458-29371503)
chr1 (361-402)||(32540755-32540796)
chr1 (361-406)||(36290497-36290542)
chr1 (361-405)||(29179601-29179645)
chr1 (222-336)||(31517672-31517784)
chr1 (361-403)||(28395643-28395685)
chr1 (361-406)||(1091634-1091679)
chr1 (262-323)||(6262777-6262838)
chr1 (217-353)||(10199335-10199469)
chr1 (361-406)||(17127654-17127699)
chr1 (361-406)||(31342266-31342311)
chr1 (361-406)||(32540838-32540883)
chr1 (361-406)||(49444916-49444961)
chr1 (361-405)||(12441045-12441089)
chr1 (361-405)||(36381596-36381640)
chr1 (366-406)||(48498418-48498458)
[»] scaffold0586 (2 HSPs)
scaffold0586 (361-406)||(7137-7181)
scaffold0586 (361-406)||(7050-7095)
[»] scaffold0161 (2 HSPs)
scaffold0161 (360-406)||(27309-27355)
scaffold0161 (361-406)||(27223-27268)
[»] chr6 (11 HSPs)
chr6 (361-403)||(12343190-12343232)
chr6 (360-406)||(24975755-24975801)
chr6 (361-406)||(24587464-24587509)
chr6 (361-406)||(24618604-24618649)
chr6 (360-406)||(551254-551300)
chr6 (286-356)||(9667979-9668049)
chr6 (265-323)||(32577959-32578017)
chr6 (361-406)||(17750906-17750950)
chr6 (361-406)||(17750992-17751037)
chr6 (247-335)||(34538175-34538261)
chr6 (362-406)||(13043548-13043592)
[»] scaffold0016 (1 HSPs)
scaffold0016 (361-406)||(49706-49751)
[»] scaffold0481 (1 HSPs)
scaffold0481 (369-405)||(2974-3010)


Alignment Details
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 30709990 - 30710035
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30709990 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 30710035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 3862635 - 3862681
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  3862635 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3862681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 3871392 - 3871438
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  3871392 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3871438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 23444358 - 23444404
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  23444358 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 23444404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 51265494 - 51265448
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  51265494 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 51265448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 35682214 - 35682169
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  35682214 cattgtgattggccaatgtcaccaatatcacctaactctatgtcac 35682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 6271751 - 6271705
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  6271751 gcattgtgattggccaatgtcaccaatatcacccaactctatgtcac 6271705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 35682256 - 35682301
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  35682256 cattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcac 35682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 47661932 - 47661977
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  47661932 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 47661977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 357
Target Start/End: Complemental strand, 2996711 - 2996578
Alignment:
Q  222 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 321  Q
    |||||||| |||||| || ||||| ||||||| |||||  || |||| ||||||| || |||| |||||||| ||||||||| |||| |||||| |||||    
T  2996711 ttatttgaacttatttattgacataagcacttttgaga--ctgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttat 2996614  T
Q  322 ttaaataaactctcccaaatggtttatgaaaacaac 357  Q
    ||  |||  |||||| | || | |||||||||||||    
T  2996613 tttcatacgctctccaagatagcttatgaaaacaac 2996578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 391
Target Start/End: Complemental strand, 30861835 - 30861800
Alignment:
Q  356 acaagcattgtgattggccaatgtcaccaatgtcac 391  Q
    ||||||||||||||||||||||||||||||||||||    
T  30861835 acaagcattgtgattggccaatgtcaccaatgtcac 30861800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 23444317 - 23444275
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgt 403  Q
    |||||||||||| ||||||||||||||||||| ||||||||||    
T  23444317 cattgtgattggtcaatgtcaccaatgtcacccaactctatgt 23444275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 30861863 - 30861909
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||    
T  30861863 gcattgtgattggccaatgtcaccaatatcatccaactctatgtcac 30861909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 6271792 - 6271837
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||    
T  6271792 cattgtgattggccaatgtcaccaatatcactcaactctatgtcac 6271837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 42375100 - 42375145
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||    
T  42375100 cattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 42375145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 53954700 - 53954745
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  53954700 cattgtaattggacaatgtcaccaatgtcacccaactctatgtcac 53954745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 26186105 - 26186149
Alignment:
Q  362 attgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  26186105 attgtgattggccaatgtcatcaatgttacccaactctatgtcac 26186149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 47661891 - 47661859
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacc 392  Q
    |||||||||||||||||||||||||||||||||    
T  47661891 gcattgtgattggccaatgtcaccaatgtcacc 47661859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 2325070 - 2325115
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||| | |||||||| |||||||||| |||||||||||||    
T  2325070 cattgtgatttgtcaatgtcatcaatgtcaccaaactctatgtcac 2325115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 6978935 - 6979004
Alignment:
Q  265 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactct 334  Q
    ||||| ||| || ||| |||||||||||| |||||| || |||| ||||||||||||||  |||||||||    
T  6978935 tttggcagaacttattgaaataacttatgacatgtctataagctgttttcagcttattttcataaactct 6979004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 44380020 - 44380065
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| |||| |||||||||||||  |||||||||||||    
T  44380020 cattgtgattggtcaatatcaccaatgtcactcaactctatgtcac 44380065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 51265535 - 51265580
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||| ||||||| ||||||||||||||||||| ||||||| |||||    
T  51265535 cattatgattggtcaatgtcaccaatgtcacccaactctaagtcac 51265580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 5048890 - 5048934
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 405  Q
    |||| |||||| ||||||||| |||||||||| ||||||||||||    
T  5048890 cattatgattgaccaatgtcatcaatgtcacccaactctatgtca 5048934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 50384182 - 50384218
Alignment:
Q  356 acaagcattgtgattggccaatgtcaccaatgtcacc 392  Q
    |||||||||||||||| | ||||||||||||||||||    
T  50384182 acaagcattgtgattgacgaatgtcaccaatgtcacc 50384218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 30734492 - 30734537
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30734492 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 30734537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 1801495 - 1801449
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  1801495 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 1801449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 41753013 - 41752967
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  41753013 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 41752967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 41753053 - 41753099
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||    
T  41753053 gcattgtgattggccaatgtcaccaatgtcactcaactctatgtcac 41753099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 43139798 - 43139844
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  43139798 gcattgttattggccaatgtcaccaatgtcacccaactctatgtcac 43139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 51046162 - 51046208
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  51046162 gcattgtgattggccaatgtcaccaatgtcatccaactctatgtcac 51046208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 55223279 - 55223235
Alignment:
Q  362 attgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||    
T  55223279 attgtgattgaccaatatcaccaatgtcacctaactctatgtcac 55223235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 47492137 - 47492182
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||| | |||||||||||| |||||||||||||    
T  47492137 cattgtgattggccaatatgaccaatgtcacccaactctatgtcac 47492182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 392
Target Start/End: Complemental strand, 47492095 - 47492064
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacc 392  Q
    ||||||||||||||||||||||||||||||||    
T  47492095 cattgtgattggccaatgtcaccaatgtcacc 47492064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 18321699 - 18321657
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgt 403  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||    
T  18321699 cattgtgattgaccaatgtcaccaatatcacccaactctatgt 18321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 39057047 - 39057089
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgt 403  Q
    |||||| |||| || ||||||||||||||||||||||||||||    
T  39057047 cattgtcattgtccgatgtcaccaatgtcacctaactctatgt 39057089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 49465869 - 49465978
Alignment:
Q  222 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 321  Q
    |||||||||||||| |||   ||| | ||||||||||||    |||| ||||||| ||  ||| |||||||| ||||||||||| ||||||||| |||||    
T  49465869 ttatttgagcttatccattagcataaacacttgtgagagt---tttgtgagagcttatagaaacaacttatgacatgtccatgaactattttcaacttat 49465965  T
Q  322 ttaaataaactct 334  Q
    ||  |||||||||    
T  49465966 ttccataaactct 49465978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 30734450 - 30734405
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||| || |||||||| |||||||||| |||||||||||||    
T  30734450 cattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcac 30734405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 33689224 - 33689179
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| ||||| ||| |||||||||| |||||||||||||    
T  33689224 cattgtgattgaccaatatcatcaatgtcacccaactctatgtcac 33689179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 36646352 - 36646425
Alignment:
Q  262 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctc 335  Q
    ||||||||||||||| ||  |||  ||||||| ||||||||| |||| |||||| |||||||  ||||||||||    
T  36646352 ctatttgggagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctc 36646425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 45103157 - 45103112
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||    
T  45103157 cattgtgattgatcaatatcaccaatgtcacccaactctatgtcac 45103112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 30580846 - 30580890
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 405  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||    
T  30580846 cattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 39429996 - 39430040
Alignment:
Q  362 attgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||| |||||||||||||| ||||||||| |||| ||||||||    
T  39429996 attgtgcttggccaatgtcactaatgtcacccaactttatgtcac 39430040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 35441058 - 35441104
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  35441058 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 35441104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 5033210 - 5033164
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  5033210 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 5033164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 7167031 - 7166969
Alignment:
Q  84 gtggaggagtgcacttactcgagctgctgatttctctggttgggatgtccccaattgcaggta 146  Q
    ||||| ||||||||| |||| ||||||| |||| ||||||||||||||| |||||||||||||    
T  7167031 gtggacgagtgcactcactcaagctgctaatttgtctggttgggatgtcaccaattgcaggta 7166969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 5033251 - 5033296
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  5033251 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 5033296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 10086847 - 10086891
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 405  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||    
T  10086847 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 2581874 - 2581828
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||| |||||||||| || ||||||||||    
T  2581874 gcattgtgattggccaatgtcaacaatgtcacccaattctatgtcac 2581828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 8243477 - 8243523
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| |||| ||||||||||||||| |||||||||||||    
T  8243477 gcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcac 8243523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 14949959 - 14949905
Alignment:
Q  269 ggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 323  Q
    |||||||| || ||||||||||||| ||||||||| |||| ||||||||||||||    
T  14949959 ggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttattt 14949905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 22649894 - 22649848
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||    
T  22649894 gcattgtgattagccaatgtcaccaatgtcactcaactctatgtcac 22649848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 33841636 - 33841594
Alignment:
Q  364 tgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  33841636 tgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 33841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 33841680 - 33841726
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  33841680 gcattctgattggtcaatgtcaccaatgtcacccaactctatgtcac 33841726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 5667145 - 5667100
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||    
T  5667145 cattgtgattgaccaatgtcaccaatgtcatccaactctatgtcac 5667100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 5667187 - 5667232
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||    
T  5667187 cattgtaattggccaatgtcaccaatgtcatcaaactctatgtcac 5667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 35441017 - 35440972
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||    
T  35441017 cattgtgattggtcaatgtcaccaatgtcacccaactctaagtcac 35440972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 25869256 - 25869310
Alignment:
Q  282 aaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctcc 336  Q
    |||||||||||| ||||||||| || | ||||||||||||||  |||||||||||    
T  25869256 aaataacttatgacatgtccataagttgttttcagcttatttccataaactctcc 25869310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 8796470 - 8796425
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| ||||| |||| ||| |||||||||||||||||||    
T  8796470 cattgtgattgaccaatatcacaaatatcacctaactctatgtcac 8796425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 8796512 - 8796557
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||| ||||||| ||||||||||||| ||||||| |||||||||||    
T  8796512 cattttgattggtcaatgtcaccaatatcacctagctctatgtcac 8796557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 10086805 - 10086760
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| |||||||||| ||||||||| || ||||||||||    
T  10086805 cattgtgattgaccaatgtcactaatgtcacccaattctatgtcac 10086760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 11016918 - 11016872
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  11016918 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 11016872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 45231940 - 45231985
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  45231940 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 45231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 34854784 - 34854830
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||    
T  34854784 gcattgtgattgaccaatgtcaccaatgtcacccaactctatgtcac 34854830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 41018317 - 41018363
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  41018317 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 41018363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 4290635 - 4290680
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||    
T  4290635 cattgtgattggccaatgtcaccaatgtcacccaactgtatgtcac 4290680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 11016959 - 11017004
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  11016959 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 11017004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 42628385 - 42628430
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||    
T  42628385 cattgtgattggccaatatcaccaatgtcacccaactctatgtcac 42628430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 48000826 - 48000869
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgt 403  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||    
T  48000826 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgt 48000869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 38975854 - 38975808
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||| |||||||||||| |||||||||||||    
T  38975854 gcattgtgattgaccaatgttaccaatgtcacccaactctatgtcac 38975808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 38975908 - 38975940
Alignment:
Q  374 caatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||||||||||    
T  38975908 caatgtcaccaatgtcacctaactctatgtcac 38975940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 33894765 - 33894657
Alignment:
Q  222 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 321  Q
    ||||||||||||||  |  ||||| |||||||||||||  || |||| ||||||| || |||| | | |||| ||||||||| || | ||||||||||||    
T  33894765 ttatttgagcttatcaaatgacataagcacttgtgaga--ctgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttat 33894668  T
Q  322 ttaaataaact 332  Q
    || ||||||||    
T  33894667 ttcaataaact 33894657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 48157093 - 48157184
Alignment:
Q  265 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaa 356  Q
    |||||||||||| ||  ||| |||||||| ||||||||| |||| ||||||||||||||  ||||  |||||| ||| | || |||||||||    
T  48157093 tttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataagatctcccgaatagcttgtgaaaacaa 48157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 4290594 - 4290548
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||| |||||||| ||||| |||||||||||||    
T  4290594 gcattgtgattgaccaatatcaccaatatcacccaactctatgtcac 4290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 48000743 - 48000697
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||  ||||||||||||||||||| ||||| |||||||    
T  48000743 gcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcac 48000697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 3500937 - 3500998
Alignment:
Q  262 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 323  Q
    ||||||| ||||||| ||  |||||||||||| ||||| ||| |||| ||||||||||||||    
T  3500937 ctatttgtgagagcttatggaaataacttatgacatgtacatcagctgttttcagcttattt 3500998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 27028776 - 27028731
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| |||||||||||||||||||  |||| ||||||||    
T  27028776 cattgtgattgtccaatgtcaccaatgtcactcaactatatgtcac 27028731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 39506013 - 39505961
Alignment:
Q  305 agctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaac 357  Q
    |||||||||||||||||||  |||||||||||  ||| | |||||||||||||    
T  39506013 agctattttcagcttatttccataaactctccagaatagcttatgaaaacaac 39505961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 291146 - 291100
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  291146 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 291100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 19655207 - 19655161
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  19655207 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 19655161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 2953280 - 2953325
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  2953280 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 2953325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 16971234 - 16971279
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  16971234 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 16971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 29699457 - 29699502
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||    
T  29699457 cattgtgattggccaatgtcaccaatatcacccaactctatgtcac 29699502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 2356364 - 2356406
Alignment:
Q  364 tgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  2356364 tgtgattggccaatgtcaccaatgtcatccaactctatgtcac 2356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 3899929 - 3899974
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||    
T  3899929 cattgtgattggtcaatgtcaccaatgtcacccaactctaagtcac 3899974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 12913851 - 12913806
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||||||||  |||| ||||||||    
T  12913851 cattgtgattggccaatgtcaccaatgtcactcaactatatgtcac 12913806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 12913893 - 12913938
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||    
T  12913893 cattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 12913938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 13312312 - 13312267
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||    
T  13312312 cattgtgattgatcaatgtcatcaatgtcacctaactctatgtcac 13312267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 19655248 - 19655293
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||    
T  19655248 cattgtgattggacaatgtcaccaatgtcactcaactctatgtcac 19655293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 19598379 - 19598335
Alignment:
Q  362 attgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||    
T  19598379 attgtgattgaccaatgtcaccaatgttacccaactctatgtcac 19598335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 29699416 - 29699384
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacc 392  Q
    |||||||||||||||||||||||||||||||||    
T  29699416 gcattgtgattggccaatgtcaccaatgtcacc 29699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 10272401 - 10272496
Alignment:
Q  262 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaac 357  Q
    ||||||||||| ||| ||  ||| |||||||| ||||||  | || | ||||||||||||||  ||||||||||| | |||| |||||||||||||    
T  10272401 ctatttgggagtgcttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaac 10272496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 32172750 - 32172692
Alignment:
Q  265 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 323  Q
    |||||||||||| ||  ||| |||||||| ||||||||| ||| |||||||||||||||    
T  32172750 tttgggagagcttatggaaacaacttatgacatgtccataagccattttcagcttattt 32172692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 291187 - 291232
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||    
T  291187 cattgtgattgatcaatgtcaccaatgtcacccaactctatatcac 291232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 2093985 - 2093940
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||  ||||||||||||| ||||| |||||||||||||    
T  2093985 cattgtgattgatcaatgtcaccaatatcacccaactctatgtcac 2093940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 10907495 - 10907417
Alignment:
Q  243 catgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 323  Q
    ||||| |||||||||||  || ||||| |||||| || |||| ||||||||||||||| || |||| ||||| ||||||||    
T  10907495 catgaacacttgtgaga--ctgtttggaagagcttatgaaaacaacttatgtcatgtcaataagctgttttcggcttattt 10907417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 30117876 - 30117831
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| |||| |||||||||||||| |||||||| ||||    
T  30117876 cattgtgattggtcaatatcaccaatgtcacccaactctatatcac 30117831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 32485640 - 32485684
Alignment:
Q  362 attgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||  ||||||||||||||||||| |||||| ||||||    
T  32485640 attgtgattgatcaatgtcaccaatgtcacccaactctgtgtcac 32485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 39777086 - 39777054
Alignment:
Q  374 caatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||| |||||||||||||    
T  39777086 caatgtcaccaatgtcacccaactctatgtcac 39777054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 6217273 - 6217227
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  6217273 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 6217227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 9173070 - 9173116
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||    
T  9173070 gcattgtgattggccaatatcaccaatgtcacccaactctatgtcac 9173116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 16514473 - 16514427
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||    
T  16514473 gcatagtgattggccaatgtcaccaatgtcacccaactctatgtcac 16514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 29508780 - 29508826
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  29508780 gcattgtgattggccaatgtcaccaatatcacccaactctatgtcac 29508826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 14229401 - 14229356
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  14229401 cattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcac 14229356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 14470640 - 14470595
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  14470640 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 14470595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 29508736 - 29508693
Alignment:
Q  363 ttgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  29508736 ttgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 29508693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 16514514 - 16514559
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||    
T  16514514 cattgtgattggtcaatgtcaccaatctcacccaactctatgtcac 16514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 32545822 - 32545789
Alignment:
Q  373 ccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||||    
T  32545822 ccaatgtcaccaatgtcacctaactctatgtcac 32545789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 32545878 - 32545923
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||    
T  32545878 cattatgattggccaatgtcaccaatgtcactaaactctatgtcac 32545923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 38933677 - 38933722
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||| ||||||||||| ||||||||||||||| |||||||||||||    
T  38933677 cattatgattggccaacgtcaccaatgtcacccaactctatgtcac 38933722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 33018635 - 33018679
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 405  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  33018635 cattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 45213892 - 45213935
Alignment:
Q  363 ttgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||| |||||||| |||||||||| |||||||||||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctatgtcac 45213935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 14770393 - 14770331
Alignment:
Q  84 gtggaggagtgcacttactcgagctgctgatttctctggttgggatgtccccaattgcaggta 146  Q
    |||||||| ||||||||| | ||||||  |||| |||||||||||||||  ||||||||||||    
T  14770393 gtggaggaatgcacttaccctagctgcaaatttatctggttgggatgtcaacaattgcaggta 14770331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 6722041 - 6722086
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||| |||| ||||||| | |||||||||||||    
T  6722041 cattgtgattggccaatatcactaatgtcaaccaactctatgtcac 6722086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 14892350 - 14892395
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||  ||||||||||||||||| | |||||||||||||    
T  14892350 cattgtgattgatcaatgtcaccaatgtcatccaactctatgtcac 14892395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 1742002 - 1742074
Alignment:
Q  262 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactct 334  Q
    ||||||||||||||| ||  ||| |||||||| ||||| ||| |||||| |||| |||||||  |||||||||    
T  1742002 ctatttgggagagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactct 1742074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 15011329 - 15011297
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacc 392  Q
    |||||||||||||||||| ||||||||||||||    
T  15011329 gcattgtgattggccaatatcaccaatgtcacc 15011297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 29179686 - 29179732
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  29179686 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 29179732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 44706873 - 44706919
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  44706873 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 44706919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 46932046 - 46932000
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  46932046 gcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 46932000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 37155094 - 37155049
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  37155094 cattgtgattggccaatgtcaccaatgtcaccaaactctatgtcac 37155049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 48994006 - 48994052
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  48994006 gcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 48994052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 48993965 - 48993920
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  48993965 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 48993920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 3597240 - 3597321
Alignment:
Q  249 cacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaact 332  Q
    |||||||||||  || ||||| |||| |||| ||||||||||||| |||| |||| |||||||||||||||||||  |||||||    
T  3597240 cacttgtgaga--ctgtttggaagagttgataaaaataacttatgacatggccataagctattttcagcttatttccataaact 3597321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 336
Target Start/End: Complemental strand, 10439837 - 10439712
Alignment:
Q  209 tgtttgagttgagttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagct 308  Q
    ||||||| |||| ||||||||||||||| || | ||| ||  |||||||||  ||||||||||||||| || |||| ||  |||| ||||||||| | ||    
T  10439837 tgtttgaattgacttatttgagcttatttatggccataagatcttgtgaga--ctatttgggagagcttatgaaaacaaactatgacatgtccataatct 10439740  T
Q  309 attttcagcttatttaaataaactctcc 336  Q
      |||||||||||||  |||||||||||    
T  10439739 gctttcagcttatttccataaactctcc 10439712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 15220902 - 15220946
Alignment:
Q  362 attgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||| |||||||||||||| |||||||||||||    
T  15220902 attgtgattggccaatatcaccaatgtcacccaactctatgtcac 15220946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 5995418 - 5995372
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||| |||||||||| | |||||||||||||    
T  5995418 gcattgtgattggccaatgttaccaatgtcatcaaactctatgtcac 5995372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 5995458 - 5995504
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||    
T  5995458 gcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcac 5995504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 46932071 - 46932116
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  46932071 gcattgtgattggtcaatgtcaccaatgtcacc-aactctatgtcac 46932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 9157358 - 9157313
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| |||||| |||||||||||| |||||||||||||    
T  9157358 cattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 9157313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 17127612 - 17127567
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||| |||||||||||||||||| ||||    
T  17127612 cattgtgattggtcaatgtcactaatgtcacctaactctatatcac 17127567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 21630090 - 21630045
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||    
T  21630090 cattgtgattggtcaatgtcaccaatgtcacccaactttatgtcac 21630045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 29371458 - 29371503
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||    
T  29371458 cattgtgattggtcaatatcaccaatgtcacctagctctatgtcac 29371503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 402
Target Start/End: Complemental strand, 32540796 - 32540755
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatg 402  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  32540796 cattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 36290497 - 36290542
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||||    
T  36290497 cattgtgattggtcaatgccaccaatgtcacccaactctatgtcac 36290542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 29179645 - 29179601
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 405  Q
    |||||||||||| || |||||||||||||||| ||||||||||||    
T  29179645 cattgtgattggtcagtgtcaccaatgtcacccaactctatgtca 29179601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 336
Target Start/End: Original strand, 31517672 - 31517784
Alignment:
Q  222 ttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttat 321  Q
    ||||||||||||||| |  | ||| |||||||||||||  || ||||||||| || || |||| |||| ||| ||||| ||| |||| ||||||||||||    
T  31517672 ttatttgagcttatttactggcataagcacttgtgaga--ctgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttat 31517769  T
Q  322 ttaaataaactctcc 336  Q
    ||  |||| ||||||    
T  31517770 tttcataagctctcc 31517784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 28395685 - 28395643
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgt 403  Q
    |||||||||||| ||||||||||||||||||  ||||||||||    
T  28395685 cattgtgattggtcaatgtcaccaatgtcactcaactctatgt 28395643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 1091634 - 1091679
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||| ||||||||| ||||| |||||||||||||    
T  1091634 cattgtgattggtcaaagtcaccaatatcacccaactctatgtcac 1091679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 6262838 - 6262777
Alignment:
Q  262 ctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 323  Q
    ||||||||||||||| || |||||||||||||  |||||||| || | |||| |||||||||    
T  6262838 ctatttgggagagcttatgaaaataacttatgatatgtccataagttgttttaagcttattt 6262777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 353
Target Start/End: Original strand, 10199335 - 10199469
Alignment:
Q  217 ttgagttatttgagcttattcatcgacatgagcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcag 316  Q
    |||| ||||||||||||||  |   |||| ||||||||||| |  |||||||||||| || || |||||| |||||| ||||| ||| || | |||||||    
T  10199335 ttgacttatttgagcttatctactaacataagcacttgtgaca--ctatttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcag 10199432  T
Q  317 cttatttaaataaactctcccaaatggtttatgaaaa 353  Q
    |||||||  |||| |||||  |||| | |||||||||    
T  10199433 cttattttcataagctctctaaaatagcttatgaaaa 10199469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 17127654 - 17127699
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||| ||||||| ||||||||| |||||||||||||||||| ||||    
T  17127654 cattttgattggtcaatgtcactaatgtcacctaactctatatcac 17127699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 31342311 - 31342266
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||| |  ||||||| |||||||||||||    
T  31342311 cattgtgattggccaatgtcatcggtgtcacccaactctatgtcac 31342266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 32540838 - 32540883
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| ||||||||||||||||| | || ||||||||||    
T  32540838 cattgtgattggtcaatgtcaccaatgtcatccaattctatgtcac 32540883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 49444961 - 49444916
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||  | ||||||||||||||||| |||||||||||||    
T  49444961 cattgtgattgatcgatgtcaccaatgtcacccaactctatgtcac 49444916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 12441045 - 12441089
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 405  Q
    |||||||||| ||||||| ||||||||||||| || |||||||||    
T  12441045 cattgtgattagccaatgccaccaatgtcaccaaattctatgtca 12441089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 36381640 - 36381596
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtca 405  Q
    |||||||||||||||||||||||||| ||| | || |||||||||    
T  36381640 cattgtgattggccaatgtcaccaatatcatcgaattctatgtca 36381596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 48498458 - 48498418
Alignment:
Q  366 tgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||| |||||||||| ||||||||| |||||||||||||    
T  48498458 tgattgaccaatgtcacaaatgtcacccaactctatgtcac 48498418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 7137 - 7181
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  7137 cattgtgattggccaatgtcaccaatgtcacc-aactctatgtcac 7181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 7095 - 7050
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||    
T  7095 cattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 27309 - 27355
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||    
T  27309 gcattgtgattggccaatatcaccaatgtcacccaactctatatcac 27355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 27268 - 27223
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||||    
T  27268 cattgtgattggccaatatcactaatgtcacccaactctatgtcac 27223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 12343190 - 12343232
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgt 403  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  12343190 cattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 24975801 - 24975755
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| |||||||||||||||||| | |||||||||||||    
T  24975801 gcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcac 24975755  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 24587509 - 24587464
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||    
T  24587509 cattgtgattgaccaatgtcactaatgtcacccaactctatgtcac 24587464  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 24618649 - 24618604
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||    
T  24618649 cattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 24618604  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 551254 - 551300
Alignment:
Q  360 gcattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||||||||||||||||||| ||| | || ||||||||||    
T  551254 gcattgtgattggccaatgtcaccaatatcatccaattctatgtcac 551300  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 9667979 - 9668049
Alignment:
Q  286 aacttatgtcatgtccatgagctattttcagcttatttaaataaactctcccaaatggtttatgaaaacaa 356  Q
    |||||||| ||||||||| |||| |||||| |||||||  |||| |||||| |||  ||||||||||||||    
T  9667979 aacttatgacatgtccataagctgttttcaacttatttccataagctctccgaaacagtttatgaaaacaa 9668049  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 32577959 - 32578017
Alignment:
Q  265 tttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttattt 323  Q
    |||| ||||||| || |||| |||||||| ||||||| |||||| ||||||||||||||    
T  32577959 tttgagagagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttattt 32578017  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 17750950 - 17750906
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||    
T  17750950 cattgtgattgaccaatgtcaccaatgtcatc-aactctatgtcac 17750906  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 17750992 - 17751037
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||| ||||||||||| |||| ||||| |||||||||||||    
T  17750992 cattgtgatcggccaatgtcatcaatatcacccaactctatgtcac 17751037  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 34538175 - 34538261
Alignment:
Q  247 agcacttgtgagaggctatttgggagagctgattaaaataacttatgtcatgtccatgagctattttcagcttatttaaataaactctc 335  Q
    |||||||||||||  ||||||| |||| || || |||| | |||| | ||||||||| | |||||||||||||||||| | ||||||||    
T  34538175 agcacttgtgaga--ctatttgagagatcttataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaactctc 34538261  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 13043548 - 13043592
Alignment:
Q  362 attgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    ||||||||| ||||||||||||||| ||||  |||||||||||||    
T  13043548 attgtgattagccaatgtcaccaatatcactcaactctatgtcac 13043592  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 49751 - 49706
Alignment:
Q  361 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 406  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||    
T  49751 cattgtgattggtcaatgtcatcaatgtcacccaactctatgtcac 49706  T

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Target: scaffold0481 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 2974 - 3010
Alignment:
Q  369 ttggccaatgtcaccaatgtcacctaactctatgtca 405  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  2974 ttggccaatgtcaccgatgtcacccaactctatgtca 3010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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