View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_18 (Length: 402)
Name: NF19372_low_18
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 10242483 - 10242088
Alignment:
| Q |
1 |
ttatagtcaaattgttcaagtatataattaaaagtgaaaagtcaatccaaaatcatgcattctctttatatagtatacatgaaccaaacaatttagattt |
100 |
Q |
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| T |
10242483 |
ttatagtcaaattgtttaagggtataattaaaagtgaaaagtcaattcaaaatcatgcattctctttatatagtatacatgaaccaaacaatttagattt |
10242384 |
T |
|
| Q |
101 |
tttaatttnnnnnnnnnn------gatagtttaactcgggtgtaacataggctttctccggcgctatannnnnnnggaataattaaggggttacactatt |
194 |
Q |
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| T |
10242383 |
tttaattttaaaaaaaaaaaaaaagatagtttaactcgg-tgttacataggttttctccggcgctatatttttttggaataattaaggggttacactatt |
10242285 |
T |
|
| Q |
195 |
taacatttcattttctctatctttgatttctccgacacttatttaacacttcattttctatggtatcatcaatctatcactagagatgtcaaaaaaccct |
294 |
Q |
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| T |
10242284 |
taacatttcattttctctatctttgatttctccgacacttatttaacacttcattttctatggtatcatcaatctatcactagagatgtcaaaaaaccct |
10242185 |
T |
|
| Q |
295 |
aatctaaactaaaaaatgggttaattgactaatcaattatttgacccatttttaagagctctatcacttatatcacatcattatctcttatctcttt |
391 |
Q |
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| T |
10242184 |
aatctaaactaaaaaatgggttaattgactaatcagttatttgacccatttttaagagttctatcacttatatcacatcattatctcttatctcttt |
10242088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 34213722 - 34213681
Alignment:
| Q |
354 |
tctatcacttatatcacatcattatctcttatctctttctatct |
397 |
Q |
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| T |
34213722 |
tctatcacatatatcacatcatt--ctcttatctctttctatct |
34213681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 11035797 - 11035854
Alignment:
| Q |
23 |
tataattaaaagtgaaaagtcaatccaaaatcatgcattctctttatatagtatacat |
80 |
Q |
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||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
11035797 |
tataattgaaagtgaaaagtcaactcaaaatcatgtattctctttatatagtatacat |
11035854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 19145843 - 19145794
Alignment:
| Q |
23 |
tataattaaaagtgaaaagtcaatccaaaatcatgcattctctttatata |
72 |
Q |
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| T |
19145843 |
tataattgaaaatgaaaagtcaatccaaaatcatgtatgctctttatata |
19145794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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