View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_19 (Length: 398)
Name: NF19372_low_19
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 49514223 - 49514592
Alignment:
| Q |
19 |
gtggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgtaatggtcttgagtttttatctagtccacttcatttaaggtttattcctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
49514223 |
gtggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgtaatggtcttgagtttttatctagtccatttgatttaaggtttattcctg |
49514322 |
T |
|
| Q |
119 |
acatttgggaattcaagcaggagcctatggatgttgtgacaaaggtataaaacatttgtaaatgcttagttatgctgtatgataataattggttgatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49514323 |
acatttgggaattcaagcaggagcctatggatgttgtgacaaaggtataaaacatttgtaaatgcttagttatgctgtatgataataattggttgatttt |
49514422 |
T |
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| Q |
219 |
aactccttccaatactcaggtacctgcgaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttgattgggaggatgat |
318 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49514423 |
aactccttccaatactcaggtacctacgaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttgattgggaggatgat |
49514522 |
T |
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| Q |
319 |
gatccctttcgcaaaaggaccttgagtcgaaaatttcctgatgagcaggtcagcactgccctagcctatg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49514523 |
gatccctttcgcaaaaggaccttgagtcgaaaatttactgatgagcaggtcagcactgccctagcctatg |
49514592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 27745801 - 27746169
Alignment:
| Q |
19 |
gtggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgtaatggtcttgagtttttatctagtccacttcatttaaggtttattcctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||||||| |
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| T |
27745801 |
gtggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgtaatggtcttgactttttatccactccacttgatttaaggtttattcctg |
27745900 |
T |
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| Q |
119 |
acatttgggaattcaagcaggagcctatggatgttgtgacaaaggtataaaacatttgtaaatgcttagttatgctgtatgataataattggttgatttt |
218 |
Q |
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|| ||||||| ||||| |||||| || |||||| ||||| ||||||| |||| || | ||||||| ||||||| |||||||||||||||| ||||| |
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| T |
27745901 |
acttttgggagttcaaacaggagtctgaggatgtcgtgactgaggtatataacacatg-atatgcttatttatgctctatgataataattggtatatttt |
27745999 |
T |
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| Q |
219 |
aactccttccaatactcaggtacctgcgaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttgattgggaggatgat |
318 |
Q |
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|||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
27746000 |
gactcctatcaatgctcaggtacctgcaaactacgtagtcaaagatttcggtcctcgagcacttcagcacagtaaagttgattttacttgggatgatgat |
27746099 |
T |
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| Q |
319 |
gatccctttcgcaaaaggaccttgagtcgaaaatttcctgatgagcaggtcagcactgccctagcctatg |
388 |
Q |
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|| ||| ||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||| ||||| |
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| T |
27746100 |
gacccccttcgcaaaaggaccttgagacggaaatttactgatgagcaggttagcactgccctagtctatg |
27746169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 38528697 - 38528633
Alignment:
| Q |
20 |
tggtggaatgtgactcaagtaccacagcagctcacatttacaaagaatgtaatggtcttgagttt |
84 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| |||||||| |
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| T |
38528697 |
tggtggaatgtgactcaagtgccacagcagatcacatttacaaagaaaatgatggtgttgagttt |
38528633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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