View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19372_low_2 (Length: 657)
Name: NF19372_low_2
Description: NF19372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19372_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 34698321 - 34697989
Alignment:
| Q |
17 |
caaaggcatgggtggttttattagggacttgaaggaagagtttaagagtgttgagaatgtttatgtttggcatgcactttgtgggtattggggtggggtt |
116 |
Q |
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| T |
34698321 |
caaaggtatgggtggttttattagggacttgaaggaagagtttaagagtgttgagaatgtttatgtttggcatgcactttgtgggtattggggtggggtt |
34698222 |
T |
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| Q |
117 |
agacctaaagtgaagggcatgcccgaagctaaggttgttactccgaagctgtctccggggctgaagatgacaatggaggatttagcggtggataagattg |
216 |
Q |
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| T |
34698221 |
agacctaaagtgaagggcatgcccgaagctaaggttgttactccgaagctgtctccggggctgaagatgacaatggaggatttagcggtggataagattg |
34698122 |
T |
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| Q |
217 |
ttaacaatggtgtaggcttagtgccaccaaatttagcccaagaaatgtttgaagggcttcactctcatttggaatcggtgggcattgacggtgttaaagt |
316 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34698121 |
ttaacaatggtgtagggttagtgccaccaaatttagcccaagaaatgtttgaagggcttcactctcatttggaatcggtgggcattgacggtgttaaagt |
34698022 |
T |
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| Q |
317 |
tgacgttattcatgtaagtcttctaaaattctc |
349 |
Q |
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| T |
34698021 |
tgacgttattcatgtaagtcttctaaaattctc |
34697989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 442 - 640
Target Start/End: Complemental strand, 34697943 - 34697743
Alignment:
| Q |
442 |
tttatttttgtggtcctaaatgatcttataccgagtaggctttcactctttcatgtttgacaaggcaaatacggatacggttactttagcggtggttcac |
541 |
Q |
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| T |
34697943 |
tttatttttgtggtcctaaatgatcttatgccgagtaggctt-cactctttcatgtttgacaaggcaaatacggatacggttactttagcggtggttcac |
34697845 |
T |
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| Q |
542 |
ttcatggtcatttgacttgagtagtaatctttg---tcataaataaaaggttacaaatgatatcactaaatgctgctcctagagaatgatgctagaattt |
638 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34697844 |
ttcatggtcatttgacttgagtagtagtctttgtcatcataaataaaaggttacaaatgatatcactaaatgctgctcctagagaatgatgctagaattt |
34697745 |
T |
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| Q |
639 |
ac |
640 |
Q |
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|| |
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| T |
34697744 |
ac |
34697743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 43563921 - 43563873
Alignment:
| Q |
73 |
atgtttatgtttggcatgcactttgtgggtattggggtggggttagacc |
121 |
Q |
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| T |
43563921 |
atgtttatgtttggcatgcactttgtggttattggggtggtgtgagacc |
43563873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 36431900 - 36431851
Alignment:
| Q |
73 |
atgtttatgtttggcatgcactttgtgggtattggggtggggttagacct |
122 |
Q |
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| T |
36431900 |
atgtttatgtttggcatgcactttgtggtgcttggggtggtgtgagacct |
36431851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 43639596 - 43639547
Alignment:
| Q |
75 |
gtttatgtttggcatgcactttgtgggtattggggtggggttagacctaa |
124 |
Q |
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|||||||| |||||||| |||||||||||||||||||| |||| ||||| |
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| T |
43639596 |
gtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaa |
43639547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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